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2WTV
Asym. Unit
Info
Asym.Unit (206 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (53 KB)
Biol.Unit 4 (52 KB)
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(1)
Title
:
AURORA-A INHIBITOR STRUCTURE
Authors
:
M. Kosmopoulou, R. Bayliss
Date
:
22 Sep 09 (Deposition) - 26 Jan 10 (Release) - 21 Apr 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Kinase, Cell Cycle, Transferase, Phosphoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Dodson, M. Kosmopoulou, M. W. Richards, B. Atrash, V. Bavetsias, J. Blagg, R. Bayliss
Crystal Structure Of An Aurora-A Mutant That Mimics Aurora-B Bound To Mln8054: Insights Into Selectivity And Drug Design.
Biochem. J. V. 427 19 2010
[
close entry info
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Hetero Components
(6, 38)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
1f: ACETATE ION (ACTf)
1g: ACETATE ION (ACTg)
1h: ACETATE ION (ACTh)
1i: ACETATE ION (ACTi)
2a: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEa)
2b: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEb)
2c: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEc)
2d: S,S-(2-HYDROXYETHYL)THIOCYSTEINE (CMEd)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
4j: 1,2-ETHANEDIOL (EDOj)
4k: 1,2-ETHANEDIOL (EDOk)
5a: PHOSPHOTHREONINE (TPOa)
5b: PHOSPHOTHREONINE (TPOb)
5c: PHOSPHOTHREONINE (TPOc)
5d: PHOSPHOTHREONINE (TPOd)
5e: PHOSPHOTHREONINE (TPOe)
5f: PHOSPHOTHREONINE (TPOf)
5g: PHOSPHOTHREONINE (TPOg)
5h: PHOSPHOTHREONINE (TPOh)
6a: 4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL... (ZZLa)
6b: 4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL... (ZZLb)
6c: 4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL... (ZZLc)
6d: 4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL... (ZZLd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
9
Ligand/Ion
ACETATE ION
2
CME
4
Mod. Amino Acid
S,S-(2-HYDROXYETHYL)THIOCYSTEINE
3
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
4
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
5
TPO
8
Mod. Amino Acid
PHOSPHOTHREONINE
6
ZZL
4
Ligand/Ion
4-{[9-CHLORO-7-(2,6-DIFLUOROPHENYL)-5H-PYRIMIDO[5,4-D][2]BENZAZEPIN-2-YL]AMINO}BENZOICACID
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:140 , VAL A:147 , LYS A:162 , LEU A:194 , GLU A:211 , TYR A:212 , ALA A:213 , ASN A:261 , LEU A:263 , ALA A:273 , ASP A:274 , VAL A:279 , ACT A:1392 , HOH A:2015 , HOH A:2072 , HOH A:2111 , HOH A:2163 , LYS C:171
BINDING SITE FOR RESIDUE ZZL A1390
02
AC2
SOFTWARE
GLN A:231 , ALA A:385 , ASN A:386 , SER A:387
BINDING SITE FOR RESIDUE EDO A1391
03
AC3
SOFTWARE
GLU A:217 , GLU A:260 , VAL A:279 , ZZL A:1390 , HOH A:2164
BINDING SITE FOR RESIDUE ACT A1392
04
AC4
SOFTWARE
HIS A:248 , MET A:373 , LEU A:374 , HOH A:2165
BINDING SITE FOR RESIDUE ACT A1393
05
AC5
SOFTWARE
TYR A:148 , ARG A:205 , PRO C:138
BINDING SITE FOR RESIDUE DMS A1394
06
AC6
SOFTWARE
ASN A:146 , TYR A:148 , GLY C:136 , ARG C:137 , HOH C:2190 , HOH C:2191
BINDING SITE FOR RESIDUE EDO C1390
07
AC7
SOFTWARE
LEU B:139 , LYS B:141 , VAL B:147 , LYS B:162 , LEU B:194 , GLU B:211 , TYR B:212 , ALA B:213 , ASN B:261 , LEU B:263 , ALA B:273 , ASP B:274 , PHE B:275 , ACT B:1393 , HOH B:2101
BINDING SITE FOR RESIDUE ZZL B1390
08
AC8
SOFTWARE
PRO B:138 , TYR D:148 , ARG D:205
BINDING SITE FOR RESIDUE DMS B1391
09
AC9
SOFTWARE
ASP B:256 , LYS B:258 , GLY B:291 , THR B:292 , HOH B:2192
BINDING SITE FOR RESIDUE ACT B1392
10
BC1
SOFTWARE
GLU B:217 , LYS B:220 , VAL B:279 , ZZL B:1390 , HOH B:2193
BINDING SITE FOR RESIDUE ACT B1393
11
BC2
SOFTWARE
EDO B:1399 , HOH B:2194 , HOH B:2195 , ASN D:146
BINDING SITE FOR RESIDUE EDO B1394
12
BC3
SOFTWARE
GLU B:170 , GLY B:173 , GLU B:175 , HIS B:176
BINDING SITE FOR RESIDUE EDO B1395
13
BC4
SOFTWARE
HIS B:201
BINDING SITE FOR RESIDUE EDO B1396
14
BC5
SOFTWARE
ASP B:202 , ALA B:203 , THR B:204
BINDING SITE FOR RESIDUE EDO B1397
15
BC6
SOFTWARE
HIS B:280 , ALA B:281 , TPO B:287 , SER D:266 , GLU D:269 , HOH D:2131
BINDING SITE FOR RESIDUE EDO B1398
16
BC7
SOFTWARE
GLY B:136 , ARG B:137 , EDO B:1394 , ASN D:146 , TYR D:148
BINDING SITE FOR RESIDUE EDO B1399
17
BC8
SOFTWARE
ASP B:229 , GLN B:231 , HOH B:2074 , ASP C:229 , GLN C:231 , ARG C:232 , HOH C:2193 , HOH C:2194
BINDING SITE FOR RESIDUE EDO C1391
18
BC9
SOFTWARE
HIS B:248 , LYS B:309 , MET B:373 , LEU B:374 , HOH B:2196 , HOH B:2197
BINDING SITE FOR RESIDUE ACT B1400
19
CC1
SOFTWARE
LEU C:139 , LYS C:141 , VAL C:147 , LYS C:162 , LEU C:194 , GLU C:211 , TYR C:212 , ALA C:213 , ASN C:261 , LEU C:263 , ALA C:273 , ASP C:274 , PHE C:275 , VAL C:279 , ACT C:1394 , HOH C:2100
BINDING SITE FOR RESIDUE ZZL C1392
20
CC2
SOFTWARE
HIS C:248 , LYS C:309 , MET C:373 , LEU C:374 , HOH C:2196
BINDING SITE FOR RESIDUE ACT C1393
21
CC3
SOFTWARE
GLU C:217 , LYS C:220 , ZZL C:1392 , HOH C:2064
BINDING SITE FOR RESIDUE ACT C1394
22
CC4
SOFTWARE
ASP C:256 , LYS C:258 , GLY C:291 , THR C:292 , HOH C:2197
BINDING SITE FOR RESIDUE EDO C1395
23
CC5
SOFTWARE
LYS B:171 , GLY D:140 , VAL D:147 , LYS D:162 , LEU D:194 , GLU D:211 , TYR D:212 , ALA D:213 , ASN D:261 , LEU D:263 , ALA D:273 , ASP D:274 , VAL D:279 , ACT D:1392 , HOH D:2017 , HOH D:2132 , HOH D:2179
BINDING SITE FOR RESIDUE ZZL D1390
24
CC6
SOFTWARE
PHE D:346 , PHE D:348 , HOH D:2180 , HOH D:2181
BINDING SITE FOR RESIDUE EDO D1391
25
CC7
SOFTWARE
GLU D:217 , GLU D:260 , VAL D:279 , ZZL D:1390 , HOH D:2182
BINDING SITE FOR RESIDUE ACT D1392
26
CC8
SOFTWARE
HIS D:248 , LYS D:309 , LEU D:374 , HOH D:2183 , HOH D:2184
BINDING SITE FOR RESIDUE ACT D1393
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041128 (S155R, chain A/B/C/D, )
2: VAR_041129 (V174M, chain A/B/C/D, )
3: VAR_041130 (M373V, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041128
S
155
R
AURKA_HUMAN
Unclassified
---
A/B/C/D
S
155
R
2
UniProt
VAR_041129
V
174
M
AURKA_HUMAN
Unclassified
---
A/B/C/D
V
174
M
3
UniProt
VAR_041130
M
373
V
AURKA_HUMAN
Polymorphism
33923703
A/B/C/D
M
373
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:139-162,B:139-162,C:139-162,D:13...)
2: PROTEIN_KINASE_ST (A:252-264,B:252-264,C:252-264,D:25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
AURKA_HUMAN
139-162
4
A:139-162
B:139-162
C:139-162
D:139-162
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
AURKA_HUMAN
252-264
4
A:252-264
B:252-264
C:252-264
D:252-264
[
close PROSITE info
]
Exons
(6, 22)
Info
All Exons
Exon 1.7 (A:125-125 | - | - | D:125-125)
Exon 1.8b (A:125-189 | B:126-189 | C:126-189 ...)
Exon 1.9 (A:189-235 | B:189-235 | C:189-235 ...)
Exon 1.10b (A:236-285 | B:236-285 | C:236-285 ...)
Exon 1.11a (A:285-343 | B:285-343 | C:285-343 ...)
Exon 1.11c (A:344-389 | B:344-389 | C:344-389 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.6b/1.7
2: Boundary 1.7/1.8b
3: Boundary 1.8b/1.9
4: Boundary 1.9/1.10b
5: Boundary 1.10b/1.11a
6: Boundary 1.11a/1.11c
7: Boundary 1.11c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1i
ENST00000347343
1i
ENSE00001022791
chr20:
54967261-54966999
263
AURKA_HUMAN
-
0
0
-
-
1.5b
ENST00000347343
5b
ENSE00000845695
chr20:
54963258-54963212
47
AURKA_HUMAN
1-14
14
0
-
-
1.6b
ENST00000347343
6b
ENSE00002179826
chr20:
54961589-54961313
277
AURKA_HUMAN
15-107
93
0
-
-
1.7
ENST00000347343
7
ENSE00000991660
chr20:
54959380-54959326
55
AURKA_HUMAN
107-125
19
2
A:125-125
-
-
D:125-125
1
-
-
1
1.8b
ENST00000347343
8b
ENSE00002188846
chr20:
54958232-54958041
192
AURKA_HUMAN
125-189
65
4
A:125-189
B:126-189
C:126-189
D:125-189
65
64
64
65
1.9
ENST00000347343
9
ENSE00000512389
chr20:
54956627-54956489
139
AURKA_HUMAN
189-235
47
4
A:189-235
B:189-235
C:189-235
D:189-235
47
47
47
47
1.10b
ENST00000347343
10b
ENSE00000662874
chr20:
54948612-54948464
149
AURKA_HUMAN
236-285
50
4
A:236-285
B:236-285
C:236-285
D:236-285
50
50
50
50
1.11a
ENST00000347343
11a
ENSE00000512391
chr20:
54945715-54945541
175
AURKA_HUMAN
285-343
59
4
A:285-343
B:285-343
C:285-343
D:285-343
59
59
59
59
1.11c
ENST00000347343
11c
ENSE00001257584
chr20:
54945396-54944446
951
AURKA_HUMAN
344-403
60
4
A:344-389
B:344-389
C:344-389
D:344-389
46
46
46
46
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wtva_ (A:)
1b: SCOP_d2wtvb_ (B:)
1c: SCOP_d2wtvc_ (C:)
1d: SCOP_d2wtvd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2wtva_
A:
1b
d2wtvb_
B:
1c
d2wtvc_
C:
1d
d2wtvd_
D:
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2wtvA01 (A:128-216)
1b: CATH_2wtvB01 (B:128-216)
1c: CATH_2wtvC01 (C:128-216)
1d: CATH_2wtvD01 (D:128-216)
2a: CATH_2wtvA02 (A:217-386)
2b: CATH_2wtvB02 (B:217-386)
2c: CATH_2wtvC02 (C:217-386)
2d: CATH_2wtvD02 (D:217-386)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2wtvA01
A:128-216
1b
2wtvB01
B:128-216
1c
2wtvC01
C:128-216
1d
2wtvD01
D:128-216
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2wtvA02
A:217-386
2b
2wtvB02
B:217-386
2c
2wtvC02
C:217-386
2d
2wtvD02
D:217-386
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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