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2WTL
Biol. Unit 1
Info
Asym.Unit (171 KB)
Biol.Unit 1 (640 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BFRA FROM M. TUBERCULOSIS
Authors
:
V. Gupta, R. K. Gupta, G. Khare, D. M. Salunke, A. K. Tyagi
Date
:
17 Sep 09 (Deposition) - 15 Dec 09 (Release) - 15 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (4x)
Keywords
:
Metal Binding Protein, Bacterioferritin A, Heme, Iron, Biliverdin, Iron Storage, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
V. Gupta, R. K. Gupta, G. Khare, D. M. Salunke, A. K. Tyagi
Crystal Structure Of Bfra From Mycobacterium Tuberculosis:Incorporation Of Selenomethionine Results In Cleavage And Demetallation Of Haem
Plos One V. 4 E8028 2009
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Hetero Components
(3, 120)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
1e: FE (III) ION (FEe)
1f: FE (III) ION (FEf)
1g: FE (III) ION (FEg)
1h: FE (III) ION (FEh)
1i: FE (III) ION (FEi)
1j: FE (III) ION (FEj)
1k: FE (III) ION (FEk)
1l: FE (III) ION (FEl)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
3a: UNKNOWN LIGAND (UNLa)
3b: UNKNOWN LIGAND (UNLb)
3c: UNKNOWN LIGAND (UNLc)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
MSE
96
Mod. Amino Acid
SELENOMETHIONINE
3
UNL
12
Ligand/Ion
UNKNOWN LIGAND
4
UNX
12
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:18 , GLU A:51 , HIS A:54 , GLU A:127
BINDING SITE FOR RESIDUE FE A 201
02
AC2
SOFTWARE
GLU A:51 , GLU A:94 , GLU A:127 , HIS A:130 , HOH A:2008 , HOH A:2023
BINDING SITE FOR RESIDUE FE A 202
03
AC3
SOFTWARE
ILE A:22 , ASN A:23 , PHE A:26 , ARG A:45 , PHE A:49 , MSE A:52 , ALA A:55 , GLU A:56 , TYR A:71 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , PHE B:49 , MSE B:52 , GLU B:56 , TYR B:71
BINDING SITE FOR RESIDUE UNL A1500
04
AC4
SOFTWARE
GLU B:18 , GLU B:51 , HIS B:54 , GLU B:127 , HOH B:2007
BINDING SITE FOR RESIDUE FE B 201
05
AC5
SOFTWARE
GLU B:51 , GLU B:94 , GLU B:127 , HIS B:130
BINDING SITE FOR RESIDUE FE B 202
06
AC6
SOFTWARE
GLU C:18 , GLU C:51 , HIS C:54 , GLU C:127
BINDING SITE FOR RESIDUE FE C 201
07
AC7
SOFTWARE
ASP C:50 , GLU C:51 , GLU C:127 , HOH C:2006 , HOH C:2015
BINDING SITE FOR RESIDUE FE C 202
08
AC8
SOFTWARE
LEU C:19 , ILE C:22 , PHE C:26 , ARG C:45 , PHE C:49 , MSE C:52 , GLU C:56 , TYR C:71 , ILE D:22 , ASN D:23 , PHE D:26 , PHE D:49 , MSE D:52 , GLU D:56
BINDING SITE FOR RESIDUE UNL C1500
09
AC9
SOFTWARE
GLU D:18 , GLU D:51 , HIS D:54 , GLU D:127 , HOH D:2017
BINDING SITE FOR RESIDUE FE D 201
10
BC1
SOFTWARE
GLU D:47 , GLU D:51 , GLU D:94 , GLU D:127 , HIS D:130 , HOH D:2004
BINDING SITE FOR RESIDUE FE D 202
11
BC2
SOFTWARE
GLU E:18 , GLU E:51 , HIS E:54 , GLU E:127 , HOH E:2003 , HOH E:2011
BINDING SITE FOR RESIDUE FE E 201
12
BC3
SOFTWARE
GLU E:51 , GLU E:94 , GLU E:127 , HIS E:130
BINDING SITE FOR RESIDUE FE E 202
13
BC4
SOFTWARE
LEU E:19 , ILE E:22 , ASN E:23 , PHE E:26 , ARG E:45 , PHE E:49 , MSE E:52 , GLU E:56 , TYR E:71 , LEU F:19 , ILE F:22 , PHE F:26 , MSE F:52 , GLU F:56
BINDING SITE FOR RESIDUE UNL E1500
14
BC5
SOFTWARE
GLU F:18 , GLU F:51 , HIS F:54 , GLU F:127
BINDING SITE FOR RESIDUE FE F 201
15
BC6
SOFTWARE
GLU F:51 , GLU F:94 , GLU F:127
BINDING SITE FOR RESIDUE FE F 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2wtla_ (A:)
1b: SCOP_d2wtle_ (E:)
1c: SCOP_d2wtlf_ (F:)
1d: SCOP_d2wtlb_ (B:)
1e: SCOP_d2wtlc_ (C:)
1f: SCOP_d2wtld_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Mycobacterium tuberculosis [TaxId: 83332]
(2)
1a
d2wtla_
A:
1b
d2wtle_
E:
1c
d2wtlf_
F:
1d
d2wtlb_
B:
1e
d2wtlc_
C:
1f
d2wtld_
D:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2wtlA00 (A:2-162)
1b: CATH_2wtlB00 (B:2-162)
1c: CATH_2wtlC00 (C:2-162)
1d: CATH_2wtlD00 (D:2-162)
1e: CATH_2wtlE00 (E:2-162)
1f: CATH_2wtlF00 (F:2-162)
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Topologies
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(1)
1a
2wtlA00
A:2-162
1b
2wtlB00
B:2-162
1c
2wtlC00
C:2-162
1d
2wtlD00
D:2-162
1e
2wtlE00
E:2-162
1f
2wtlF00
F:2-162
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Ferritin_2wtlF01 (F:8-144)
1b: PFAM_Ferritin_2wtlF02 (F:8-144)
1c: PFAM_Ferritin_2wtlF03 (F:8-144)
1d: PFAM_Ferritin_2wtlF04 (F:8-144)
1e: PFAM_Ferritin_2wtlF05 (F:8-144)
1f: PFAM_Ferritin_2wtlF06 (F:8-144)
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Organisms
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)
(
)
Clan
:
Ferritin
(185)
Family
:
Ferritin
(83)
Mycobacterium tuberculosis
(2)
1a
Ferritin-2wtlF01
F:8-144
1b
Ferritin-2wtlF02
F:8-144
1c
Ferritin-2wtlF03
F:8-144
1d
Ferritin-2wtlF04
F:8-144
1e
Ferritin-2wtlF05
F:8-144
1f
Ferritin-2wtlF06
F:8-144
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Atom Selection
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Chain D
Chain E
Chain F
Asymmetric Unit 1
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Asymmetric Unit 3
Asymmetric Unit 4
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