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2WT2
Biol. Unit 1
Info
Asym.Unit (215 KB)
Biol.Unit 1 (105 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
GALECTIN DOMAIN OF PORCINE ADENOVIRUS TYPE 4 NADC-1 ISOLATE FIBRE COMPLEXED WITH TRI(N-ACETYL-LACTOSAMINE)
Authors
:
P. Guardado-Calvo, E. M. Munoz, A. L. Llamas-Saiz, G. C. Fox, J. N. Glasg M. J. Van Raaij
Date
:
10 Sep 09 (Deposition) - 11 Aug 10 (Release) - 13 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Guardado-Calvo, E. M. Munoz, A. L. Llamas-Saiz, G. C. Fox, R. Kahn, D. T. Curiel, J. N. Glasgow, M. J. Van Raaij
Crystallographic Structure Of Porcine Adenovirus 4 Fibre 2 Head And Galectin Domains.
J. Virol. V. 84 10558 2010
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: NITRATE ION (NO3a)
3b: NITRATE ION (NO3b)
3c: NITRATE ION (NO3c)
3d: NITRATE ION (NO3d)
3e: NITRATE ION (NO3e)
3f: NITRATE ION (NO3f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NO3
3
Ligand/Ion
NITRATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:393 , PHE A:394 , VAL A:395 , THR A:569 , PRO A:570 , LEU A:571
BINDING SITE FOR RESIDUE NO3 A1686
02
AC2
SOFTWARE
THR A:415 , PRO A:416 , SER A:417 , ASP A:546 , ALA A:547 , TYR A:548 , VAL A:549 , HOH A:2059
BINDING SITE FOR RESIDUE NO3 A1687
03
AC3
SOFTWARE
ASN A:578 , VAL A:580 , HIS A:584 , SER A:587 , HIS A:670
BINDING SITE FOR RESIDUE NO3 A1688
04
BC3
SOFTWARE
LYS A:650 , ARG B:439 , GLU B:462 , ARG B:464 , GAL B:1693
BINDING SITE FOR RESIDUE NAG B1694
05
BC4
SOFTWARE
LYS A:446 , GLU A:471 , GLU A:573 , PHE A:598 , ARG A:629 , NAG A:1690
BINDING SITE FOR RESIDUE GAL A1689
06
BC5
SOFTWARE
ALA A:430 , LEU A:432 , ARG A:453 , GLU A:573 , GAL A:1689 , GAL A:1691
BINDING SITE FOR RESIDUE NAG A1690
07
BC6
SOFTWARE
ARG A:453 , PHE A:574 , NAG A:1690 , NAG A:1692 , HOH A:2005
BINDING SITE FOR RESIDUE GAL A1691
08
BC7
SOFTWARE
ASP A:424 , LEU A:432 , HIS A:435 , ARG A:453 , TRP A:459 , TYR A:585 , GAL A:1691 , GAL A:1693
BINDING SITE FOR RESIDUE NAG A1692
09
BC8
SOFTWARE
HIS A:435 , ASN A:437 , ARG A:439 , VAL A:449 , ASN A:451 , TRP A:459 , GLU A:462 , TYR A:585 , NAG A:1692 , NAG A:1694
BINDING SITE FOR RESIDUE GAL A1693
10
BC9
SOFTWARE
ARG A:439 , GLU A:462 , ARG A:464 , GAL A:1693 , HOH A:2061
BINDING SITE FOR RESIDUE NAG A1694
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Gal_bind_lectin_2wt2B01 (B:547-682)
1b: PFAM_Gal_bind_lectin_2wt2B02 (B:547-682)
1c: PFAM_Gal_bind_lectin_2wt2B03 (B:547-682)
1d: PFAM_Gal_bind_lectin_2wt2B04 (B:547-682)
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Clans
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)
(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Gal-bind_lectin
(60)
Porcine adenovirus B serotype 4 (PAdV-4) (Porcine adenovirus 4)
(5)
1a
Gal-bind_lectin-2wt2B01
B:547-682
1b
Gal-bind_lectin-2wt2B02
B:547-682
1c
Gal-bind_lectin-2wt2B03
B:547-682
1d
Gal-bind_lectin-2wt2B04
B:547-682
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (105 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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