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2WSS
Biol. Unit 1
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (580 KB)
Biol.Unit 2 (554 KB)
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(1)
Title
:
THE STRUCTURE OF THE MEMBRANE EXTRINSIC REGION OF BOVINE ATP SYNTHASE
Authors
:
D. M. Rees, A. G. W. Leslie, J. E. Walker
Date
:
09 Sep 09 (Deposition) - 17 Nov 09 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,S,T,U,V (1x)
Biol. Unit 2: J,K,L,M,N,O,P,Q,R,W,X,Z (1x)
Keywords
:
Hydrogen Ion Transport, Atp Synthesis, Phosphoprotein, Ubl Conjugation, Transit Peptide, Nucleotide-Binding, Acetylation, Atp-Binding, Ion Transport, Mitochondrion, Pyrrolidone Carboxylic Acid, Hydrolase, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Rees, A. G. W. Leslie, J. E. Walker
The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase
Proc. Natl. Acad. Sci. Usa V. 106 21597 2009
[
close entry info
]
Hetero Components
(3, 17)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2b: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPb)
2c: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPc)
2d: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPd)
2e: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPe)
2f: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPf)
2g: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPg)
2h: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPh)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
ANP
4
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:172 , THR A:173 , GLY A:174 , LYS A:175 , THR A:176 , SER A:177 , GLU A:328 , ARG A:362 , PRO A:363 , GLN A:430 , GLN A:432 , MG A:601 , TYR D:368
BINDING SITE FOR RESIDUE ANP A 600
02
AC2
SOFTWARE
THR A:176 , ASP A:269 , ANP A:600
BINDING SITE FOR RESIDUE MG A 601
03
AC3
SOFTWARE
ASP B:170 , GLN B:172 , THR B:173 , GLY B:174 , LYS B:175 , THR B:176 , SER B:177 , GLU B:328 , PHE B:357 , GLN B:430 , GLN B:432 , MG B:601 , ARG E:356 , ASP E:359
BINDING SITE FOR RESIDUE ANP B 600
04
AC4
SOFTWARE
THR B:176 , GLN B:208 , ASP B:269 , ANP B:600
BINDING SITE FOR RESIDUE MG B 601
05
AC5
SOFTWARE
ASP C:170 , ARG C:171 , GLN C:172 , THR C:173 , GLY C:174 , LYS C:175 , THR C:176 , SER C:177 , ARG C:362 , GLN C:430 , GLN C:432 , MG C:601 , TYR F:368
BINDING SITE FOR RESIDUE ANP C 600
06
AC6
SOFTWARE
THR C:176 , ASP C:269 , ANP C:600
BINDING SITE FOR RESIDUE MG C 601
07
AC7
SOFTWARE
ARG C:373 , GLY D:159 , GLY D:161 , LYS D:162 , THR D:163 , VAL D:164 , TYR D:345 , PHE D:418 , ALA D:421 , PHE D:424 , MG D:601
BINDING SITE FOR RESIDUE ADP D 600
08
AC8
SOFTWARE
THR D:163 , GLU D:188 , ARG D:189 , GLU D:192 , ADP D:600
BINDING SITE FOR RESIDUE MG D 601
09
AC9
SOFTWARE
SER B:344 , ARG B:373 , GLY F:159 , GLY F:161 , LYS F:162 , THR F:163 , VAL F:164 , GLU F:188 , ARG F:189 , TYR F:345 , PHE F:418 , PHE F:424 , MG F:601
BINDING SITE FOR RESIDUE ANP F 600
10
BC1
SOFTWARE
THR F:163 , GLU F:188 , ARG F:189 , ANP F:600
BINDING SITE FOR RESIDUE MG F 601
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: ATPASE_GAMMA (G:258-271)
2: ATPASE_ALPHA_BETA (D:346-355,E:346-355,F:346-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ATPASE_GAMMA
PS00153
ATP synthase gamma subunit signature.
ATPG_BOVIN
283-296
1
G:258-271
-
2
ATPASE_ALPHA_BETA
PS00152
ATP synthase alpha and beta subunits signature.
ATPB_BOVIN
396-405
3
D:346-355
E:346-355
F:346-355
-
-
-
ATPA_BOVIN
406-415
3
A:363-372
B:363-372
C:363-372
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(8, 42)
Info
all CATH domains
1a: CATH_2wssG02 (G:26-231)
1b: CATH_2wssP02 (P:26-231)
2a: CATH_2wssD02 (D:82-357)
2b: CATH_2wssA02 (A:94-379)
2c: CATH_2wssB02 (B:94-379)
2d: CATH_2wssC02 (C:94-379)
2e: CATH_2wssJ02 (J:94-379)
2f: CATH_2wssK02 (K:94-379)
2g: CATH_2wssL02 (L:94-379)
2h: CATH_2wssE02 (E:82-357)
2i: CATH_2wssF02 (F:82-357)
2j: CATH_2wssM02 (M:82-357)
2k: CATH_2wssN02 (N:82-357)
2l: CATH_2wssO02 (O:82-357)
3a: CATH_2wssI00 (I:1-47)
3b: CATH_2wssR00 (R:1-47)
4a: CATH_2wssE03 (E:358-474)
4b: CATH_2wssF03 (F:358-474)
4c: CATH_2wssN03 (N:358-474)
4d: CATH_2wssO03 (O:358-474)
4e: CATH_2wssD03 (D:358-475)
4f: CATH_2wssM03 (M:358-475)
5a: CATH_2wssG01 (G:1-25,G:232-272)
5b: CATH_2wssP01 (P:1-25,P:232-272)
6a: CATH_2wssA03 (A:380-510)
6b: CATH_2wssC03 (C:380-510)
6c: CATH_2wssJ03 (J:380-510)
6d: CATH_2wssL03 (L:380-510)
6e: CATH_2wssB03 (B:380-509)
6f: CATH_2wssK03 (K:380-509)
7a: CATH_2wssB01 (B:24-93)
7b: CATH_2wssJ01 (J:24-93)
7c: CATH_2wssK01 (K:24-93)
7d: CATH_2wssC01 (C:27-93)
7e: CATH_2wssL01 (L:30-93)
7f: CATH_2wssA01 (A:1-93)
8a: CATH_2wssD01 (D:9-81)
8b: CATH_2wssE01 (E:9-81)
8c: CATH_2wssF01 (F:9-81)
8d: CATH_2wssM01 (M:9-81)
8e: CATH_2wssN01 (N:9-81)
8f: CATH_2wssO01 (O:9-81)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pyruvate Kinase; Chain: A, domain 1
(36)
Homologous Superfamily
:
[code=3.40.1380.10, no name defined]
(14)
Bovine (Bos taurus)
(12)
1a
2wssG02
G:26-231
1b
2wssP02
P:26-231
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Bovine (Bos taurus)
(17)
2a
2wssD02
D:82-357
2b
2wssA02
A:94-379
2c
2wssB02
B:94-379
2d
2wssC02
C:94-379
2e
2wssJ02
J:94-379
2f
2wssK02
K:94-379
2g
2wssL02
L:94-379
2h
2wssE02
E:82-357
2i
2wssF02
F:82-357
2j
2wssM02
M:82-357
2k
2wssN02
N:82-357
2l
2wssO02
O:82-357
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Atp Synthase Epsilon Chain; Chain: I;
(69)
Homologous Superfamily
:
[code=1.10.1620.20, no name defined]
(5)
Bovine (Bos taurus)
(4)
3a
2wssI00
I:1-47
3b
2wssR00
R:1-47
Topology
:
Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3
(32)
Homologous Superfamily
:
Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3
(32)
Bovine (Bos taurus)
(17)
4a
2wssE03
E:358-474
4b
2wssF03
F:358-474
4c
2wssN03
N:358-474
4d
2wssO03
O:358-474
4e
2wssD03
D:358-475
4f
2wssM03
M:358-475
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.80, no name defined]
(43)
Bovine (Bos taurus)
(13)
5a
2wssG01
G:1-25,G:232-272
5b
2wssP01
P:1-25,P:232-272
Architecture
:
Up-down Bundle
(3216)
Topology
:
Lysin
(39)
Homologous Superfamily
:
[code=1.20.150.20, no name defined]
(33)
Bovine (Bos taurus)
(17)
6a
2wssA03
A:380-510
6b
2wssC03
C:380-510
6c
2wssJ03
J:380-510
6d
2wssL03
L:380-510
6e
2wssB03
B:380-509
6f
2wssK03
K:380-509
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Bovine (Bos taurus)
(17)
7a
2wssB01
B:24-93
7b
2wssJ01
J:24-93
7c
2wssK01
K:24-93
7d
2wssC01
C:27-93
7e
2wssL01
L:30-93
7f
2wssA01
A:1-93
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
[code=2.40.10.170, no name defined]
(33)
Bovine (Bos taurus)
(17)
8a
2wssD01
D:9-81
8b
2wssE01
E:9-81
8c
2wssF01
F:9-81
8d
2wssM01
M:9-81
8e
2wssN01
N:9-81
8f
2wssO01
O:9-81
[
close CATH info
]
Pfam Domains
(10, 49)
Info
all PFAM domains
01a: PFAM_Mt_ATP_synt_B_2wssX01 (X:161-202)
01b: PFAM_Mt_ATP_synt_B_2wssX02 (X:161-202)
02a: PFAM_OSCP_2wssW01 (W:14-146)
02b: PFAM_OSCP_2wssW02 (W:14-146)
03a: PFAM_ATP_synt_ab_N_2wssL01 (L:30-92)
03b: PFAM_ATP_synt_ab_N_2wssL02 (L:30-92)
03c: PFAM_ATP_synt_ab_N_2wssL03 (L:30-92)
03d: PFAM_ATP_synt_ab_N_2wssL04 (L:30-92)
03e: PFAM_ATP_synt_ab_N_2wssL05 (L:30-92)
03f: PFAM_ATP_synt_ab_N_2wssL06 (L:30-92)
03g: PFAM_ATP_synt_ab_N_2wssO01 (O:13-79)
03h: PFAM_ATP_synt_ab_N_2wssO02 (O:13-79)
03i: PFAM_ATP_synt_ab_N_2wssO03 (O:13-79)
03j: PFAM_ATP_synt_ab_N_2wssO04 (O:13-79)
03k: PFAM_ATP_synt_ab_N_2wssO05 (O:13-79)
03l: PFAM_ATP_synt_ab_N_2wssO06 (O:13-79)
04a: PFAM_ATP_synt_ab_2wssL07 (L:148-372)
04b: PFAM_ATP_synt_ab_2wssL08 (L:148-372)
04c: PFAM_ATP_synt_ab_2wssL09 (L:148-372)
04d: PFAM_ATP_synt_ab_2wssL10 (L:148-372)
04e: PFAM_ATP_synt_ab_2wssL11 (L:148-372)
04f: PFAM_ATP_synt_ab_2wssL12 (L:148-372)
04g: PFAM_ATP_synt_ab_2wssO07 (O:135-355)
04h: PFAM_ATP_synt_ab_2wssO08 (O:135-355)
04i: PFAM_ATP_synt_ab_2wssO09 (O:135-355)
04j: PFAM_ATP_synt_ab_2wssO10 (O:135-355)
04k: PFAM_ATP_synt_ab_2wssO11 (O:135-355)
04l: PFAM_ATP_synt_ab_2wssO12 (O:135-355)
05a: PFAM_ATP_synt_2wssP01 (P:1-272)
05b: PFAM_ATP_synt_2wssP02 (P:1-272)
06a: PFAM_ATP_synt_DE_N_2wssQ01 (Q:16-97)
06b: PFAM_ATP_synt_DE_N_2wssQ02 (Q:16-97)
07a: PFAM_ATP_synt_Eps_2wssR01 (R:2-47)
07b: PFAM_ATP_synt_Eps_2wssR02 (R:2-47)
08a: PFAM_ATP_synt_F6_2wssZ01 (Z:17-48)
08b: PFAM_ATP_synt_F6_2wssZ02 (Z:17-48)
09a: PFAM_ATP_synt_ab_C_2wssL13 (L:384-488)
09b: PFAM_ATP_synt_ab_C_2wssL14 (L:384-488)
09c: PFAM_ATP_synt_ab_C_2wssL15 (L:384-488)
09d: PFAM_ATP_synt_ab_C_2wssL16 (L:384-488)
09e: PFAM_ATP_synt_ab_C_2wssL17 (L:384-488)
09f: PFAM_ATP_synt_ab_C_2wssL18 (L:384-488)
09g: PFAM_ATP_synt_ab_C_2wssO13 (O:368-474)
09h: PFAM_ATP_synt_ab_C_2wssO14 (O:368-474)
09i: PFAM_ATP_synt_ab_C_2wssO15 (O:368-474)
09j: PFAM_ATP_synt_ab_C_2wssO16 (O:368-474)
09k: PFAM_ATP_synt_ab_C_2wssO17 (O:368-474)
09l: PFAM_ATP_synt_ab_C_2wssO18 (O:368-474)
10a: PFAM_Mt_ATP_synt_D_2wssU01 (U:30-91)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ATP_synthase
(9)
Family
:
Mt_ATP-synt_B
(1)
Bos taurus (Bovine)
(1)
01a
Mt_ATP-synt_B-2wssX01
X:161-202
01b
Mt_ATP-synt_B-2wssX02
X:161-202
Family
:
OSCP
(2)
Bos taurus (Bovine)
(2)
02a
OSCP-2wssW01
W:14-146
02b
OSCP-2wssW02
W:14-146
Clan
:
HAS-barrel
(27)
Family
:
ATP-synt_ab_N
(27)
Bos taurus (Bovine)
(14)
03a
ATP-synt_ab_N-2wssL01
L:30-92
03b
ATP-synt_ab_N-2wssL02
L:30-92
03c
ATP-synt_ab_N-2wssL03
L:30-92
03d
ATP-synt_ab_N-2wssL04
L:30-92
03e
ATP-synt_ab_N-2wssL05
L:30-92
03f
ATP-synt_ab_N-2wssL06
L:30-92
03g
ATP-synt_ab_N-2wssO01
O:13-79
03h
ATP-synt_ab_N-2wssO02
O:13-79
03i
ATP-synt_ab_N-2wssO03
O:13-79
03j
ATP-synt_ab_N-2wssO04
O:13-79
03k
ATP-synt_ab_N-2wssO05
O:13-79
03l
ATP-synt_ab_N-2wssO06
O:13-79
Clan
:
P-loop_NTPase
(1112)
Family
:
ATP-synt_ab
(44)
Bos taurus (Bovine)
(14)
04a
ATP-synt_ab-2wssL07
L:148-372
04b
ATP-synt_ab-2wssL08
L:148-372
04c
ATP-synt_ab-2wssL09
L:148-372
04d
ATP-synt_ab-2wssL10
L:148-372
04e
ATP-synt_ab-2wssL11
L:148-372
04f
ATP-synt_ab-2wssL12
L:148-372
04g
ATP-synt_ab-2wssO07
O:135-355
04h
ATP-synt_ab-2wssO08
O:135-355
04i
ATP-synt_ab-2wssO09
O:135-355
04j
ATP-synt_ab-2wssO10
O:135-355
04k
ATP-synt_ab-2wssO11
O:135-355
04l
ATP-synt_ab-2wssO12
O:135-355
Clan
:
no clan defined [family: ATP-synt]
(22)
Family
:
ATP-synt
(22)
Bos taurus (Bovine)
(14)
05a
ATP-synt-2wssP01
P:1-272
05b
ATP-synt-2wssP02
P:1-272
Clan
:
no clan defined [family: ATP-synt_DE_N]
(15)
Family
:
ATP-synt_DE_N
(15)
Bos taurus (Bovine)
(6)
06a
ATP-synt_DE_N-2wssQ01
Q:16-97
06b
ATP-synt_DE_N-2wssQ02
Q:16-97
Clan
:
no clan defined [family: ATP-synt_Eps]
(11)
Family
:
ATP-synt_Eps
(11)
Bos taurus (Bovine)
(6)
07a
ATP-synt_Eps-2wssR01
R:2-47
07b
ATP-synt_Eps-2wssR02
R:2-47
Clan
:
no clan defined [family: ATP-synt_F6]
(1)
Family
:
ATP-synt_F6
(1)
Bos taurus (Bovine)
(1)
08a
ATP-synt_F6-2wssZ01
Z:17-48
08b
ATP-synt_F6-2wssZ02
Z:17-48
Clan
:
no clan defined [family: ATP-synt_ab_C]
(32)
Family
:
ATP-synt_ab_C
(32)
Bos taurus (Bovine)
(14)
09a
ATP-synt_ab_C-2wssL13
L:384-488
09b
ATP-synt_ab_C-2wssL14
L:384-488
09c
ATP-synt_ab_C-2wssL15
L:384-488
09d
ATP-synt_ab_C-2wssL16
L:384-488
09e
ATP-synt_ab_C-2wssL17
L:384-488
09f
ATP-synt_ab_C-2wssL18
L:384-488
09g
ATP-synt_ab_C-2wssO13
O:368-474
09h
ATP-synt_ab_C-2wssO14
O:368-474
09i
ATP-synt_ab_C-2wssO15
O:368-474
09j
ATP-synt_ab_C-2wssO16
O:368-474
09k
ATP-synt_ab_C-2wssO17
O:368-474
09l
ATP-synt_ab_C-2wssO18
O:368-474
Clan
:
no clan defined [family: Mt_ATP-synt_D]
(1)
Family
:
Mt_ATP-synt_D
(1)
Bos taurus (Bovine)
(1)
10a
Mt_ATP-synt_D-2wssU01
U:30-91
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