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2WSB
Asym. Unit
Info
Asym.Unit (413 KB)
Biol.Unit 1 (405 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE SHORT-CHAIN DEHYDROGENASE GALACTITOL-DEHYDROGENASE (GATDH) OF RHODOBACTER SPHAEROIDES IN COMPLEX WITH NAD
Authors
:
Y. Carius, H. Christian, A. Faust, P. Kornberger, G. W. Kohring, F. Giffhorn, A. J. Scheidig
Date
:
04 Sep 09 (Deposition) - 28 Apr 10 (Release) - 30 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Sdr, Rossmann Fold, Tagatose
(Keyword Search:
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Reference
:
Y. Carius, H. Christian, A. Faust, U. Zander, B. U. Klink, P. Kornberger, G. W. Kohring, F. Giffhorn, A. J. Scheidig
Structural Insight Into Substrate Differentiation Of The Sugar-Metabolizing Enzyme Galactitol Dehydrogenase From Rhodobacter Sphaeroides D.
J. Biol. Chem. V. 285 20006 2010
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3a: N-PROPANOL (POLa)
3b: N-PROPANOL (POLb)
3c: N-PROPANOL (POLc)
3d: N-PROPANOL (POLd)
3e: N-PROPANOL (POLe)
3f: N-PROPANOL (POLf)
3g: N-PROPANOL (POLg)
3h: N-PROPANOL (POLh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
POL
8
Ligand/Ion
N-PROPANOL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:254 , HOH A:2465 , HOH A:2467 , TRP B:254 , HOH B:2413 , HOH B:2414
BINDING SITE FOR RESIDUE MG A 256
02
AC2
SOFTWARE
GLY A:18 , SER A:21 , GLY A:22 , ILE A:23 , ASP A:42 , ARG A:43 , ALA A:65 , ASP A:66 , VAL A:67 , SER A:92 , ALA A:93 , GLY A:94 , VAL A:115 , LEU A:142 , GLY A:143 , SER A:144 , TYR A:159 , LYS A:163 , PRO A:189 , GLY A:190 , VAL A:192 , THR A:194 , MET A:196 , THR A:197 , POL A:1256 , HOH A:2158 , HOH A:2298 , HOH A:2300 , HOH A:2368 , HOH A:2469
BINDING SITE FOR RESIDUE NAD A 500
03
AC3
SOFTWARE
GLY B:18 , SER B:21 , GLY B:22 , ILE B:23 , ASP B:42 , ARG B:43 , GLU B:44 , ALA B:65 , ASP B:66 , VAL B:67 , SER B:92 , ALA B:93 , LEU B:142 , GLY B:143 , SER B:144 , TYR B:159 , LYS B:163 , PRO B:189 , GLY B:190 , VAL B:192 , THR B:194 , GLU B:195 , MET B:196 , THR B:197 , POL B:1255 , HOH B:2036 , HOH B:2137 , HOH B:2141 , HOH B:2192 , HOH B:2241 , HOH B:2243 , HOH B:2416 , HOH B:2417
BINDING SITE FOR RESIDUE NAD B 500
04
AC4
SOFTWARE
TRP C:254 , HOH C:2452 , HOH C:2453 , TRP D:254 , HOH D:2418 , HOH D:2420
BINDING SITE FOR RESIDUE MG C 256
05
AC5
SOFTWARE
GLY C:18 , SER C:21 , GLY C:22 , ILE C:23 , ASP C:42 , ARG C:43 , GLU C:44 , ALA C:65 , ASP C:66 , VAL C:67 , SER C:92 , ALA C:93 , VAL C:115 , LEU C:142 , GLY C:143 , SER C:144 , TYR C:159 , LYS C:163 , PRO C:189 , GLY C:190 , TYR C:191 , VAL C:192 , THR C:194 , MET C:196 , THR C:197 , POL C:1255 , HOH C:2101 , HOH C:2126 , HOH C:2128 , HOH C:2136 , HOH C:2265 , HOH C:2266 , HOH C:2311 , HOH C:2456
BINDING SITE FOR RESIDUE NAD C 500
06
AC6
SOFTWARE
GLY D:18 , SER D:21 , GLY D:22 , ILE D:23 , ASP D:42 , ARG D:43 , ALA D:65 , ASP D:66 , VAL D:67 , SER D:92 , ALA D:93 , VAL D:115 , LEU D:142 , GLY D:143 , SER D:144 , TYR D:159 , LYS D:163 , PRO D:189 , GLY D:190 , VAL D:192 , THR D:194 , MET D:196 , THR D:197 , POL D:1256 , HOH D:2038 , HOH D:2128 , HOH D:2246 , HOH D:2247 , HOH D:2249 , HOH D:2421 , HOH D:2423
BINDING SITE FOR RESIDUE NAD D 500
07
AC7
SOFTWARE
SER C:144 , MET C:145 , SER C:146 , ASN C:151 , TYR C:159 , NAD C:500 , POL C:1256
BINDING SITE FOR RESIDUE POL C1255
08
AC8
SOFTWARE
ASN A:151 , GLN A:154 , TYR A:159
BINDING SITE FOR RESIDUE POL A1255
09
AC9
SOFTWARE
SER B:144 , SER B:146 , ASN B:151 , TYR B:159 , TYR B:191 , MET B:196 , THR B:197 , NAD B:500 , POL B:1256
BINDING SITE FOR RESIDUE POL B1255
10
BC1
SOFTWARE
ASN B:151 , GLN B:154 , MET B:160 , MET B:200 , POL B:1255
BINDING SITE FOR RESIDUE POL B1256
11
BC2
SOFTWARE
LEU D:98 , GLN D:154 , TYR D:159
BINDING SITE FOR RESIDUE POL D1255
12
BC3
SOFTWARE
ALA C:96 , ASN C:151 , GLN C:154 , TYR C:159 , POL C:1255
BINDING SITE FOR RESIDUE POL C1256
13
BC4
SOFTWARE
SER A:144 , SER A:146 , ASN A:151 , TYR A:159 , TYR A:191 , NAD A:500
BINDING SITE FOR RESIDUE POL A1256
14
BC5
SOFTWARE
SER D:144 , SER D:146 , ASN D:151 , TYR D:159 , NAD D:500
BINDING SITE FOR RESIDUE POL D1256
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_adh_short_C2_2wsbD01 (D:18-252)
1b: PFAM_adh_short_C2_2wsbD02 (D:18-252)
1c: PFAM_adh_short_C2_2wsbD03 (D:18-252)
1d: PFAM_adh_short_C2_2wsbD04 (D:18-252)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
(3)
1a
adh_short_C2-2wsbD01
D:18-252
1b
adh_short_C2-2wsbD02
D:18-252
1c
adh_short_C2-2wsbD03
D:18-252
1d
adh_short_C2-2wsbD04
D:18-252
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