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2WRF
Biol. Unit 1
Info
Asym.Unit (1.4 MB)
Biol.Unit 1 (486 KB)
Biol.Unit 2 (481 KB)
Biol.Unit 3 (484 KB)
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(1)
Title
:
STRUCTURE OF H2 AVIAN JENA HEMAGGLUTININ WITH HUMAN RECEPTOR
Authors
:
J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
Date
:
01 Sep 09 (Deposition) - 29 Sep 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: G,H,I (1x)
Keywords
:
Viral Protein, Glycoprotein, Lipoprotein, Envelope Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
From The Cover: Structures Of Receptor Complexes Formed By Hemagglutinins From The Asian Influenza Pandemic Of 1957.
Proc. Natl. Acad. Sci. Usa V. 106 17175 2009
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
2a: O-SIALIC ACID (SIAa)
2b: O-SIALIC ACID (SIAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
2
SIA
2
Ligand/Ion
O-SIALIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR D:95 , GLY D:133 , GLY D:134 , SER D:135 , GLN D:136 , TRP D:152 , HIS D:182 , GLU D:189 , LEU D:193 , GLN D:225 , GLY D:227
BINDING SITE FOR RESIDUE SIA D1497
2
AC2
SOFTWARE
TYR F:95 , GLY F:133 , GLY F:134 , SER F:135 , GLN F:136 , ASN F:185 , GLU F:189 , LEU F:193 , GLN F:225 , GAL F:1498
BINDING SITE FOR RESIDUE SIA F1497
3
AC3
SOFTWARE
SIA F:1497
BINDING SITE FOR RESIDUE GAL F1498
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 18)
Info
All SCOP Domains
1a: SCOP_d2wrfa1 (A:7-325)
1b: SCOP_d2wrfb1 (B:7-325)
1c: SCOP_d2wrfc1 (C:7-325)
1d: SCOP_d2wrfd1 (D:7-325)
1e: SCOP_d2wrfe1 (E:7-325)
1f: SCOP_d2wrff1 (F:7-325)
1g: SCOP_d2wrfg1 (G:7-325)
1h: SCOP_d2wrfh1 (H:7-325)
1i: SCOP_d2wrfi1 (I:7-325)
2a: SCOP_d2wrfa2 (A:330-496)
2b: SCOP_d2wrfb2 (B:330-496)
2c: SCOP_d2wrfc2 (C:330-496)
2d: SCOP_d2wrfd2 (D:330-496)
2e: SCOP_d2wrfe2 (E:330-496)
2f: SCOP_d2wrff2 (F:330-496)
2g: SCOP_d2wrfg2 (G:330-496)
2h: SCOP_d2wrfh2 (H:330-496)
2i: SCOP_d2wrfi2 (I:330-496)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId: 139280]
(1)
1a
d2wrfa1
A:7-325
1b
d2wrfb1
B:7-325
1c
d2wrfc1
C:7-325
1d
d2wrfd1
D:7-325
1e
d2wrfe1
E:7-325
1f
d2wrff1
F:7-325
1g
d2wrfg1
G:7-325
1h
d2wrfh1
H:7-325
1i
d2wrfi1
I:7-325
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)) [TaxId: 139280]
(1)
2a
d2wrfa2
A:330-496
2b
d2wrfb2
B:330-496
2c
d2wrfc2
C:330-496
2d
d2wrfd2
D:330-496
2e
d2wrfe2
E:330-496
2f
d2wrff2
F:330-496
2g
d2wrfg2
G:330-496
2h
d2wrfh2
H:330-496
2i
d2wrfi2
I:330-496
[
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CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_2wrfA02 (A:52-272)
1b: CATH_2wrfB02 (B:52-272)
1c: CATH_2wrfC02 (C:52-272)
1d: CATH_2wrfD02 (D:52-272)
1e: CATH_2wrfE02 (E:52-272)
1f: CATH_2wrfF02 (F:52-272)
1g: CATH_2wrfG02 (G:52-272)
1h: CATH_2wrfH02 (H:52-272)
1i: CATH_2wrfI02 (I:52-272)
2a: CATH_2wrfA01 (A:7-51,A:273-496)
2b: CATH_2wrfB01 (B:7-51,B:273-496)
2c: CATH_2wrfC01 (C:7-51,C:273-496)
2d: CATH_2wrfD01 (D:7-51,D:273-496)
2e: CATH_2wrfE01 (E:7-51,E:273-496)
2f: CATH_2wrfF01 (F:7-51,F:273-496)
2g: CATH_2wrfG01 (G:7-51,G:273-496)
2h: CATH_2wrfH01 (H:7-51,H:273-496)
2i: CATH_2wrfI01 (I:7-51,I:273-496)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)). Organism_taxid: 139280
(1)
1a
2wrfA02
A:52-272
1b
2wrfB02
B:52-272
1c
2wrfC02
C:52-272
1d
2wrfD02
D:52-272
1e
2wrfE02
E:52-272
1f
2wrfF02
F:52-272
1g
2wrfG02
G:52-272
1h
2wrfH02
H:52-272
1i
2wrfI02
I:52-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/chicken/potsdam/4705/1984(h2n2)). Organism_taxid: 139280
(1)
2a
2wrfA01
A:7-51,A:273-496
2b
2wrfB01
B:7-51,B:273-496
2c
2wrfC01
C:7-51,C:273-496
2d
2wrfD01
D:7-51,D:273-496
2e
2wrfE01
E:7-51,E:273-496
2f
2wrfF01
F:7-51,F:273-496
2g
2wrfG01
G:7-51,G:273-496
2h
2wrfH01
H:7-51,H:273-496
2i
2wrfI01
I:7-51,I:273-496
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (1.4 MB)
Header - Asym.Unit
Biol.Unit 1 (486 KB)
Header - Biol.Unit 1
Biol.Unit 2 (481 KB)
Header - Biol.Unit 2
Biol.Unit 3 (484 KB)
Header - Biol.Unit 3
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