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2WRE
Asym. Unit
Info
Asym.Unit (489 KB)
Biol.Unit 1 (481 KB)
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(1)
Title
:
STRUCTURE OF H2 JAPAN HEMAGGLUTININ WITH HUMAN RECEPTOR
Authors
:
J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
Date
:
01 Sep 09 (Deposition) - 29 Sep 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Viral Protein, Glycoprotein, Envelope Protein, Lipoprotein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Liu, D. J. Stevens, L. F. Haire, P. A. Walker, P. J. Coombs, R. J. Russell, S. J. Gamblin, J. J. Skehel
From The Cover: Structures Of Receptor Complexes Formed By Hemagglutinins From The Asian Influenza Pandemic Of 1957.
Proc. Natl. Acad. Sci. Usa V. 106 17175 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
2a: O-SIALIC ACID (SIAa)
2b: O-SIALIC ACID (SIAb)
2c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
SIA
3
Ligand/Ion
O-SIALIC ACID
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR C:95 , GLY C:134 , SER C:135 , GLN C:136 , HIS C:182 , GLU C:189 , LEU C:193 , LEU C:225 , SER C:227 , GAL C:1495
BINDING SITE FOR RESIDUE SIA C1494
2
AC2
SOFTWARE
LYS C:221 , GLY C:224 , LEU C:225 , SIA C:1494
BINDING SITE FOR RESIDUE GAL C1495
3
AC3
SOFTWARE
TYR A:95 , GLY A:133 , GLY A:134 , SER A:135 , GLN A:136 , THR A:154 , HIS A:182 , GLU A:189 , LEU A:193 , LEU A:225 , SER A:227 , GAL A:1495
BINDING SITE FOR RESIDUE SIA A1494
4
AC4
SOFTWARE
SIA A:1494
BINDING SITE FOR RESIDUE GAL A1495
5
AC5
SOFTWARE
TYR B:95 , GLY B:133 , GLY B:134 , SER B:135 , GLN B:136 , TRP B:152 , HIS B:182 , GLU B:189 , LEU B:193 , LEU B:225 , SER B:227 , GAL B:1496
BINDING SITE FOR RESIDUE SIA B1495
6
AC6
SOFTWARE
LYS B:221 , LEU B:225 , SIA B:1495 , ASP C:358
BINDING SITE FOR RESIDUE GAL B1496
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2wrea1 (A:8-325)
1b: SCOP_d2wreb1 (B:5-325)
1c: SCOP_d2wrec1 (C:8-324)
2a: SCOP_d2wrea2 (A:330-493)
2b: SCOP_d2wreb2 (B:330-494)
2c: SCOP_d2wrec2 (C:330-493)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza a virus (a/japan/305+/1957(h2n2)) [TaxId: 382813]
(2)
1a
d2wrea1
A:8-325
1b
d2wreb1
B:5-325
1c
d2wrec1
C:8-324
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Influenza a virus (a/japan/305+/1957(h2n2)) [TaxId: 382813]
(2)
2a
d2wrea2
A:330-493
2b
d2wreb2
B:330-494
2c
d2wrec2
C:330-493
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2wreB02 (B:52-272)
1b: CATH_2wreC02 (C:52-272)
1c: CATH_2wreA02 (A:52-272)
2a: CATH_2wreA01 (A:8-51,A:273-493)
2b: CATH_2wreC01 (C:8-51,C:273-493)
2c: CATH_2wreB01 (B:5-51,B:273-494)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/japan/305+/1957(h2n2)). Organism_taxid: 382813
(2)
1a
2wreB02
B:52-272
1b
2wreC02
C:52-272
1c
2wreA02
A:52-272
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/japan/305+/1957(h2n2)). Organism_taxid: 382813
(2)
2a
2wreA01
A:8-51,A:273-493
2b
2wreC01
C:8-51,C:273-493
2c
2wreB01
B:5-51,B:273-494
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_2wreC01 (C:8-493)
1b: PFAM_Hemagglutinin_2wreC02 (C:8-493)
1c: PFAM_Hemagglutinin_2wreC03 (C:8-493)
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Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Japan/305/1957 H2N2)
(9)
1a
Hemagglutinin-2wreC01
C:8-493
1b
Hemagglutinin-2wreC02
C:8-493
1c
Hemagglutinin-2wreC03
C:8-493
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Asymmetric Unit 1
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Asym.Unit (489 KB)
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