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2WR9
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BURKHOLDERIA CENOCEPACIA LECTIN (BCLA) COMPLEXED WITH AMAN1-3MAN DISACCHARIDE
Authors
:
E. Lameignere, T. C. Shiao, R. Roy, M. Wimmerova, F. Dubreuil, A. Varrot A. Imberty
Date
:
01 Sep 09 (Deposition) - 15 Sep 09 (Release) - 03 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Sugar Binding Protein, Bacterial Lectin, Oligosaccharides
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
E. Lameignere, T. C. Shiao, R. Roy, M. Wimmerova, F. Dubreuil, A. Varrot, A. Imberty
Structural Basis Of The Affinity For Oligomannosides And Analogs Displayed By Bc2L-A, A Burkholderia Cenocepacia Soluble Lectin.
Glycobiology V. 20 87 2010
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
3
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:28 , ASP A:115 , ASN A:117 , ASP A:118 , MAN A:1129 , GLY B:128
BINDING SITE FOR RESIDUE CA A1131
02
AC2
SOFTWARE
GLU A:109 , ASP A:113 , ASP A:115 , ASP A:118 , MAN A:1129
BINDING SITE FOR RESIDUE CA A1132
03
AC3
SOFTWARE
GLU B:109 , ASP B:113 , ASP B:115 , ASP B:118 , HOH B:2103
BINDING SITE FOR RESIDUE CA B1129
04
AC4
SOFTWARE
GLY A:128 , ASN B:28 , ASP B:115 , ASN B:117 , ASP B:118
BINDING SITE FOR RESIDUE CA B1130
05
AC5
SOFTWARE
ASN C:28 , ALA C:29 , ALA C:30 , GLU C:31 , ASP C:110 , HIS C:112 , ASP C:113 , ASP C:115 , ASP C:118 , CA C:1130 , CA C:1131 , HOH C:2118 , HOH C:2119 , GLY D:128
BINDING SITE FOR RESIDUE MAN C1129
06
AC6
SOFTWARE
ASN C:28 , ASP C:115 , ASN C:117 , ASP C:118 , MAN C:1129 , GLY D:128
BINDING SITE FOR RESIDUE CA C1130
07
AC7
SOFTWARE
GLU C:109 , ASP C:113 , ASP C:115 , ASP C:118 , MAN C:1129
BINDING SITE FOR RESIDUE CA C1131
08
AC8
SOFTWARE
GLU D:109 , ASP D:113 , ASP D:115 , ASP D:118 , MAN D:1129
BINDING SITE FOR RESIDUE CA D1131
09
AC9
SOFTWARE
GLY C:128 , ASN D:28 , ASP D:115 , ASN D:117 , ASP D:118 , MAN D:1129
BINDING SITE FOR RESIDUE CA D1132
10
BC1
SOFTWARE
ALA B:29 , ALA B:30 , GLU B:31 , ASP B:110 , HIS B:112 , HOH B:2102 , HOH B:2103
BINDING SITE FOR RESIDUE SO4 B1131
11
BC2
SOFTWARE
HIS B:34 , LYS B:36 , TYR B:48 , SO4 B:1134 , HOH B:2104 , HOH B:2105 , HOH B:2106
BINDING SITE FOR RESIDUE SO4 B1132
12
BC3
SOFTWARE
HIS B:49 , LYS B:50 , ARG B:58 , HOH B:2108 , HOH B:2109
BINDING SITE FOR RESIDUE SO4 B1133
13
BC4
SOFTWARE
LYS B:50 , SO4 B:1132 , HOH B:2017 , HOH B:2110
BINDING SITE FOR RESIDUE SO4 B1134
14
BC5
SOFTWARE
ARG C:58 , HOH C:2120 , HOH C:2121
BINDING SITE FOR RESIDUE SO4 C1132
15
BC6
SOFTWARE
HIS D:49 , LYS D:50 , ARG D:58 , HOH D:2043
BINDING SITE FOR RESIDUE SO4 D1133
16
BC7
SOFTWARE
HIS C:49 , LYS C:50 , ARG C:58 , HOH C:2055
BINDING SITE FOR RESIDUE SO4 C1133
17
BC8
SOFTWARE
ASN A:28 , ALA A:29 , ALA A:30 , GLU A:31 , GLU A:109 , ASP A:110 , HIS A:112 , ASP A:113 , ASP A:115 , ASP A:118 , CA A:1131 , CA A:1132 , HOH A:2111 , HOH A:2112 , HOH A:2113 , HOH A:2114 , GLY B:128
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 1129 TO 1130
18
BC9
SOFTWARE
GLY C:128 , HOH C:2117 , ASN D:28 , ALA D:29 , ALA D:30 , GLU D:31 , GLU D:109 , ASP D:110 , HIS D:112 , ASP D:113 , ASP D:115 , ASP D:118 , CA D:1131 , CA D:1132 , HOH D:2112 , HOH D:2113 , HOH D:2114 , HOH D:2115
BINDING SITE FOR CHAIN D OF DI-SACCHARIDE MAN D1129 AND MAN D1130
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wr9a_ (A:)
1b: SCOP_d2wr9b_ (B:)
1c: SCOP_d2wr9c_ (C:)
1d: SCOP_d2wr9d_ (D:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Calcium-mediated lectin
(32)
Superfamily
:
Calcium-mediated lectin
(32)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Burkholderia cenocepacia [TaxId: 216591]
(5)
1a
d2wr9a_
A:
1b
d2wr9b_
B:
1c
d2wr9c_
C:
1d
d2wr9d_
D:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PA_IIL_2wr9D01 (D:13-127)
1b: PFAM_PA_IIL_2wr9D02 (D:13-127)
1c: PFAM_PA_IIL_2wr9D03 (D:13-127)
1d: PFAM_PA_IIL_2wr9D04 (D:13-127)
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Organisms
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)
(
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Clan
:
no clan defined [family: PA-IIL]
(21)
Family
:
PA-IIL
(21)
Burkholderia cepacia (strain J2315 / LMG 16656) (Burkholderia cenocepacia (strain J2315))
(2)
1a
PA-IIL-2wr9D01
D:13-127
1b
PA-IIL-2wr9D02
D:13-127
1c
PA-IIL-2wr9D03
D:13-127
1d
PA-IIL-2wr9D04
D:13-127
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (96 KB)
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