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2WQL
Biol. Unit 1
Info
Asym.Unit (101 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (138 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MAJOR CARROT ALLERGEN DAU C 1
Authors
:
Z. Markovic-Housley, A. Basle, S. Padavattan, K. Hoffmann-Sommergru T. Schirmer
Date
:
24 Aug 09 (Deposition) - 01 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (3x)
Biol. Unit 2: C,D (3x)
Keywords
:
Pathogenesis-Related Protein, Allergen, Plant Defense
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Markovic-Housley, A. Basle, S. Padavattan, B. Maderegger, T. Schirmer, K. Hoffmann-Sommergruber
Structure Of The Major Carrot Allergen Dau C 1.
Acta Crystallogr. , Sect. D V. 65 1206 2009
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
2a: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Ca)
2b: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cb)
2c: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cc)
2d: O-ACETALDEHYDYL-HEXAETHYLENE GLYCO... (P4Cd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
P4C
6
Ligand/Ion
O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
3
PEG
12
Ligand/Ion
DI(HYDROXYETHYL)ETHER
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:23 , TYR A:39 , THR A:116 , ASN A:140 , LEU A:143
BINDING SITE FOR RESIDUE P4C A 200
02
AC2
SOFTWARE
ILE A:90 , GLN A:139 , ASN A:140
BINDING SITE FOR RESIDUE PEG A 201
03
AC3
SOFTWARE
HIS A:121
BINDING SITE FOR RESIDUE CL A 300
04
AC4
SOFTWARE
SER A:15 , LYS A:18
BINDING SITE FOR RESIDUE CL A 301
05
AC5
SOFTWARE
HIS A:6 , SER A:7
BINDING SITE FOR RESIDUE CL A 302
06
AC6
SOFTWARE
SER A:5
BINDING SITE FOR RESIDUE CL A 303
07
AC7
SOFTWARE
ILE B:23 , TYR B:39 , THR B:116 , ASN B:140 , LEU B:143
BINDING SITE FOR RESIDUE P4C B 200
08
AC8
SOFTWARE
GLN B:139 , ASN B:140
BINDING SITE FOR RESIDUE PEG B 201
09
AC9
SOFTWARE
ASP A:72 , ASN B:75 , GLU B:77
BINDING SITE FOR RESIDUE PEG B 202
10
BC1
SOFTWARE
ASP A:72 , ASP A:82 , HIS A:101 , GLU B:77 , ALA B:78
BINDING SITE FOR RESIDUE PEG B 203
11
BC2
SOFTWARE
HIS B:121
BINDING SITE FOR RESIDUE CL B 300
12
BC3
SOFTWARE
LYS B:18
BINDING SITE FOR RESIDUE CL B 301
13
BC4
SOFTWARE
GLN B:4 , SER B:5
BINDING SITE FOR RESIDUE CL B 303
[
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SAPs(SNPs)/Variants
(7, 42)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_DAU1_DAUCA_001 (T36T, chain A/B, )
2: VAR_DAU1_DAUCA_002 (E43D, chain A/B, )
3: VAR_DAU1_DAUCA_003 (T66T, chain A/B, )
4: VAR_DAU1_DAUCA_004 (S80S, chain A/B, )
5: VAR_DAU1_DAUCA_005 (G93E, chain A/B, )
6: VAR_DAU1_DAUCA_006 (M102M, chain A/B, )
7: VAR_DAU1_DAUCA_007 (A138E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DAU1_DAUCA_001
*
P
36
T
DAU1_DAUCA
---
---
A/B
T
36
T
2
UniProt
VAR_DAU1_DAUCA_002
*
E
43
D
DAU1_DAUCA
---
---
A/B
E
43
D
3
UniProt
VAR_DAU1_DAUCA_003
*
S
66
T
DAU1_DAUCA
---
---
A/B
T
66
T
4
UniProt
VAR_DAU1_DAUCA_004
*
T
80
S
DAU1_DAUCA
---
---
A/B
S
80
S
5
UniProt
VAR_DAU1_DAUCA_005
*
G
93
E
DAU1_DAUCA
---
---
A/B
G
93
E
6
UniProt
VAR_DAU1_DAUCA_006
*
L
102
M
DAU1_DAUCA
---
---
A/B
M
102
M
7
UniProt
VAR_DAU1_DAUCA_007
*
A
138
E
DAU1_DAUCA
---
---
A/B
A
138
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: PATHOGENESIS_BETVI (A:88-120,B:88-120)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PATHOGENESIS_BETVI
PS00451
Pathogenesis-related proteins Bet v I family signature.
DAU1_DAUCA
88-120
6
A:88-120
B:88-120
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2wqla_ (A:)
1b: SCOP_d2wqlb_ (B:)
1c: SCOP_d2wqlc_ (C:)
1d: SCOP_d2wqld_ (D:)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Pathogenesis-related protein 10 (PR10)-like
(38)
Protein domain
:
automated matches
(9)
Carrot (Daucus carota) [TaxId: 4039]
(1)
1a
d2wqla_
A:
1b
d2wqlb_
B:
1c
d2wqlc_
C:
1d
d2wqld_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2wqlA00 (A:3-154)
1b: CATH_2wqlB00 (B:3-154)
1c: CATH_2wqlC00 (C:3-154)
1d: CATH_2wqlD00 (D:3-154)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4
(47)
Homologous Superfamily
:
[code=3.30.530.20, no name defined]
(47)
Carrot (Daucus carota)
(1)
1a
2wqlA00
A:3-154
1b
2wqlB00
B:3-154
1c
2wqlC00
C:3-154
1d
2wqlD00
D:3-154
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Bet_v_1_2wqlD01 (D:3-154)
1b: PFAM_Bet_v_1_2wqlD02 (D:3-154)
1c: PFAM_Bet_v_1_2wqlD03 (D:3-154)
1d: PFAM_Bet_v_1_2wqlD04 (D:3-154)
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Clans
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(
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(
)
Organisms
(
)
(
)
Clan
:
Bet_V_1_like
(93)
Family
:
Bet_v_1
(12)
Daucus carota (Carrot)
(1)
1a
Bet_v_1-2wqlD01
D:3-154
1b
Bet_v_1-2wqlD02
D:3-154
1c
Bet_v_1-2wqlD03
D:3-154
1d
Bet_v_1-2wqlD04
D:3-154
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