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Getting 'Hetero Component' information from database.
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2WQA
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (134 KB)
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(1)
Title
:
COMPLEX OF TTR AND RBP4 AND OLEIC ACID
Authors
:
M. Nanao, D. Mercer, L. Nguyen, D. Buckley, T. J. Stout
Date
:
14 Aug 09 (Deposition) - 01 Sep 10 (Release) - 01 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hydrolase-Signaling Protein Complex, Thyroid Hormone, Retinol- Binding, Disease Mutation, Sensory Transduction, Vitamin A, Neuropathy, Amyloidosis, Vision, Hormone, Amyloid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Nanao, T. J. Stout
Crystal Structure Of Rbp4 Bound To Linoleic Acid And Ttr
To Be Published
[
close entry info
]
Hetero Components
(2, 13)
Info
All Hetero Components
1a: OLEIC ACID (OLAa)
1b: OLEIC ACID (OLAb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
OLA
2
Ligand/Ion
OLEIC ACID
2
SO4
11
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:34 , ALA A:36 , ALA A:37
BINDING SITE FOR RESIDUE SO4 A1125
02
AC2
SOFTWARE
ASP C:38 , LYS E:12 , ARG E:19 , TYR E:111
BINDING SITE FOR RESIDUE SO4 C1125
03
AC3
SOFTWARE
LYS A:15 , LYS C:15
BINDING SITE FOR RESIDUE SO4 A1126
04
AC4
SOFTWARE
ARG C:34 , ALA C:36 , ALA C:37
BINDING SITE FOR RESIDUE SO4 C1126
05
AC5
SOFTWARE
LYS E:29 , PRO E:32 , LEU E:35 , PHE E:36 , LEU E:37 , ALA E:57 , MET E:73 , VAL E:74 , GLY E:75 , TYR E:90 , TYR E:133 , PHE E:135
BINDING SITE FOR RESIDUE OLA E1177
06
AC6
SOFTWARE
ARG E:5 , SER E:7 , ASP E:126 , ARG E:153
BINDING SITE FOR RESIDUE SO4 E1178
07
AC7
SOFTWARE
VAL E:11 , LYS E:12 , GLU E:13 , ASP E:108
BINDING SITE FOR RESIDUE SO4 E1179
08
AC8
SOFTWARE
PRO E:32 , GLY E:34 , LEU E:35
BINDING SITE FOR RESIDUE SO4 E1180
09
AC9
SOFTWARE
LYS F:29 , PRO F:32 , LEU F:35 , PHE F:36 , LEU F:37 , MET F:73 , TYR F:90 , HIS F:104 , GLN F:117 , ARG F:121 , TYR F:133 , PHE F:135 , PHE F:137
BINDING SITE FOR RESIDUE OLA F1177
10
BC1
SOFTWARE
ASP A:38 , LYS F:12 , ARG F:19
BINDING SITE FOR RESIDUE SO4 F1178
11
BC2
SOFTWARE
SER F:7 , GLY F:127 , ARG F:153
BINDING SITE FOR RESIDUE SO4 F1179
12
BC3
SOFTWARE
VAL F:11 , LYS F:12 , GLU F:13 , ASP F:108
BINDING SITE FOR RESIDUE SO4 F1180
13
BC4
SOFTWARE
ARG F:10 , GLN F:154 , ARG F:155
BINDING SITE FOR RESIDUE SO4 F1181
[
close Site info
]
SAPs(SNPs)/Variants
(89, 349)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_007546 (G6S, chain C, )
02: VAR_007547 (C10R, chain A/B/C/D, )
03: VAR_038959 (L12P, chain A/B/C/D, )
04: VAR_038960 (M13I, chain A/B/C/D, )
05: VAR_007548 (D18E, chain A/B/C/D, )
06: VAR_007549 (D18G, chain A/B/C/D, )
07: VAR_007550 (V20I, chain A/B/C/D, )
08: VAR_038961 (S23N, chain A/B/C/D, )
09: VAR_007551 (P24S, chain A/B/C/D, )
10: VAR_010658 (V28M, chain A/B/C/D, )
11: VAR_007552 (V30A, chain A/B/C/D, )
12: VAR_038962 (V30G, chain A/B/C/D, )
13: VAR_007553 (V30L, chain A/B/C/D, )
14: VAR_007554 (V30M, chain A/B/C/D, )
15: VAR_038963 (F33C, chain A/B/C/D, )
16: VAR_007555 (F33I, chain A/B/C/D, )
17: VAR_007556 (F33L, chain A/B/C/D, )
18: VAR_038964 (F33V, chain A/B/C/D, )
19: VAR_038965 (R34T, chain A/B/C/D, )
20: VAR_038966 (K35N, chain A/B/C/D, )
21: VAR_007557 (A36P, chain A/B/C/D, )
22: VAR_038967 (D38A, chain A/B/C/D, )
23: VAR_038968 (D38V, chain A/B/C/D, )
24: VAR_038969 (W41L, chain A/B/C/D, )
25: VAR_009276 (I41N, chain E/F, )
26: VAR_038970 (E42D, chain A/B/C/D, )
27: VAR_007558 (E42G, chain A/B/C/D, )
28: VAR_038971 (F44S, chain A/B/C/D, )
29: VAR_007559 (A45D, chain A/B/C/D, )
30: VAR_038972 (A45S, chain A/B/C/D, )
31: VAR_007560 (A45T, chain A/B/C/D, )
32: VAR_007561 (G47A, chain A/B/C/D, )
33: VAR_038973 (G47E, chain A/B/C/D, )
34: VAR_007562 (G47R, chain A/B/C/D, )
35: VAR_007563 (G47V, chain A/B/C/D, )
36: VAR_007564 (T49A, chain A/B/C/D, )
37: VAR_038974 (T49I, chain A/B/C/D, )
38: VAR_007565 (S50I, chain A/B/C/D, )
39: VAR_007566 (S50R, chain A/B/C/D, )
40: VAR_007567 (S52P, chain A/B/C/D, )
41: VAR_038975 (G53E, chain A/B/C/D, )
42: VAR_007568 (E54G, chain A/B/C/D, )
43: VAR_038976 (E54K, chain A/B/C/D, )
44: VAR_007569 (L55P, chain A/B/C/D, )
45: VAR_038977 (L55Q, chain A/B/C/D, )
46: VAR_007570 (L58H, chain A/B/C/D, )
47: VAR_007571 (L58R, chain A/B/C/D, )
48: VAR_007572 (T59K, chain A/B/C/D, )
49: VAR_007573 (T60A, chain A/B/C/D, )
50: VAR_038978 (E61G, chain A/B/C/D, )
51: VAR_007574 (E61K, chain A/B/C/D, )
52: VAR_007575 (F64L, chain A/B/C/D, )
53: VAR_007576 (I68L, chain A/B/C/D, )
54: VAR_007577 (Y69H, chain A/B/C/D, )
55: VAR_007578 (K70N, chain A/B/C/D, )
56: VAR_007579 (V71A, chain A/B/C/D, )
57: VAR_007580 (I73V, chain A/B/C/D, )
58: VAR_007581 (D74H, chain A/B/C/D, )
59: VAR_009277 (G75D, chain E/F, )
60: VAR_007582 (S77Y, chain A/B/C/D, )
61: VAR_038979 (Y78F, chain A/B/C/D, )
62: VAR_007583 (I84N, chain A/B/C/D, )
63: VAR_007584 (I84S, chain A/B/C/D, )
64: VAR_038980 (I84T, chain A/B/C/D, )
65: VAR_010659 (E89K, chain A/B/C/D, )
66: VAR_007585 (E89Q, chain A/B/C/D, )
67: VAR_007586 (H90N, chain A/B/C/D, )
68: VAR_007587 (A91S, chain A/B/C/D, )
69: VAR_038981 (V94A, chain A/B/C/D, )
70: VAR_007588 (A97G, chain A/B/C/D, )
71: VAR_038982 (A97S, chain A/B/C/D, )
72: VAR_007589 (G101S, chain A/B/C/D, )
73: VAR_007590 (P102R, chain A/B/C/D, )
74: VAR_007591 (R104C, chain A/B/C/D, )
75: VAR_038983 (R104H, chain A/B/C/D, )
76: VAR_038984 (T106N, chain A/B/C/D, )
77: VAR_038985 (I107M, chain A/B/C/D, )
78: VAR_007592 (I107V, chain A/B/C/D, )
79: VAR_007593 (A109T, chain A/B/C/D, )
80: VAR_007594 (L111M, chain A/B/C/D, )
81: VAR_007595 (Y114C, chain A/B/C/D, )
82: VAR_007598 (Y114H, chain A/B/C/D, )
83: VAR_007596 (Y116S, chain A/B/C/D, )
84: VAR_007597 (Y116V, chain A/B/C/D, )
85: VAR_007599 (T119M, chain A/B/C/D, )
86: VAR_038986 (A120S, chain A/B/C/D, )
87: VAR_038987 (V122A, chain A/B/C/D, )
88: VAR_007600 (V122I, chain A/B/C/D, )
89: VAR_038988 (N124S, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007546
G
26
S
TTHY_HUMAN
Polymorphism
1800458
C
G
6
S
02
UniProt
VAR_007547
C
30
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
C
10
R
03
UniProt
VAR_038959
L
32
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
12
P
04
UniProt
VAR_038960
M
33
I
TTHY_HUMAN
Polymorphism
---
A/B/C/D
M
13
I
05
UniProt
VAR_007548
D
38
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
D
18
E
06
UniProt
VAR_007549
D
38
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
D
18
G
07
UniProt
VAR_007550
V
40
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
20
I
08
UniProt
VAR_038961
S
43
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
S
23
N
09
UniProt
VAR_007551
P
44
S
TTHY_HUMAN
Disease (AMYL-TTR)
11541790
A/B/C/D
P
24
S
10
UniProt
VAR_010658
V
48
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
28
M
11
UniProt
VAR_007552
V
50
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
30
A
12
UniProt
VAR_038962
V
50
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
30
G
13
UniProt
VAR_007553
V
50
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
30
L
14
UniProt
VAR_007554
V
50
M
TTHY_HUMAN
Disease (AMYL-TTR)
28933979
A/B/C/D
V
30
M
15
UniProt
VAR_038963
F
53
C
TTHY_HUMAN
Unclassified
---
A/B/C/D
F
33
C
16
UniProt
VAR_007555
F
53
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
F
33
I
17
UniProt
VAR_007556
F
53
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
F
33
L
18
UniProt
VAR_038964
F
53
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
F
33
V
19
UniProt
VAR_038965
R
54
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
R
34
T
20
UniProt
VAR_038966
K
55
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
K
35
N
21
UniProt
VAR_007557
A
56
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
36
P
22
UniProt
VAR_038967
D
58
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
D
38
A
23
UniProt
VAR_038968
D
58
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
D
38
V
24
UniProt
VAR_038969
W
61
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
W
41
L
25
UniProt
VAR_009276
I
59
N
RET4_HUMAN
Disease (RDCCAS)
121918584
E/F
I
41
N
26
UniProt
VAR_038970
E
62
D
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
A/B/C/D
E
42
D
27
UniProt
VAR_007558
E
62
G
TTHY_HUMAN
Disease (AMYL-TTR)
11541796
A/B/C/D
E
42
G
28
UniProt
VAR_038971
F
64
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
F
44
S
29
UniProt
VAR_007559
A
65
D
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
45
D
30
UniProt
VAR_038972
A
65
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
45
S
31
UniProt
VAR_007560
A
65
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
45
T
32
UniProt
VAR_007561
G
67
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
G
47
A
33
UniProt
VAR_038973
G
67
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
G
47
E
34
UniProt
VAR_007562
G
67
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
G
47
R
35
UniProt
VAR_007563
G
67
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
G
47
V
36
UniProt
VAR_007564
T
69
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
T
49
A
37
UniProt
VAR_038974
T
69
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
T
49
I
38
UniProt
VAR_007565
S
70
I
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
S
50
I
39
UniProt
VAR_007566
S
70
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
S
50
R
40
UniProt
VAR_007567
S
72
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
S
52
P
41
UniProt
VAR_038975
G
73
E
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
G
53
E
42
UniProt
VAR_007568
E
74
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
54
G
43
UniProt
VAR_038976
E
74
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
54
K
44
UniProt
VAR_007569
L
75
P
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
55
P
45
UniProt
VAR_038977
L
75
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
55
Q
46
UniProt
VAR_007570
L
78
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
58
H
47
UniProt
VAR_007571
L
78
R
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
58
R
48
UniProt
VAR_007572
T
79
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
T
59
K
49
UniProt
VAR_007573
T
80
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
T
60
A
50
UniProt
VAR_038978
E
81
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
61
G
51
UniProt
VAR_007574
E
81
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
61
K
52
UniProt
VAR_007575
F
84
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
F
64
L
53
UniProt
VAR_007576
I
88
L
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
68
L
54
UniProt
VAR_007577
Y
89
H
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
Y
69
H
55
UniProt
VAR_007578
K
90
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
K
70
N
56
UniProt
VAR_007579
V
91
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
71
A
57
UniProt
VAR_007580
I
93
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
73
V
58
UniProt
VAR_007581
D
94
H
TTHY_HUMAN
Polymorphism
---
A/B/C/D
D
74
H
59
UniProt
VAR_009277
G
93
D
RET4_HUMAN
Disease (RDCCAS)
121918585
E/F
G
75
D
60
UniProt
VAR_007582
S
97
Y
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
S
77
Y
61
UniProt
VAR_038979
Y
98
F
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
Y
78
F
62
UniProt
VAR_007583
I
104
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
84
N
63
UniProt
VAR_007584
I
104
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
84
S
64
UniProt
VAR_038980
I
104
T
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
84
T
65
UniProt
VAR_010659
E
109
K
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
89
K
66
UniProt
VAR_007585
E
109
Q
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
E
89
Q
67
UniProt
VAR_007586
H
110
N
TTHY_HUMAN
Polymorphism
---
A/B/C/D
H
90
N
68
UniProt
VAR_007587
A
111
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
91
S
69
UniProt
VAR_038981
V
114
A
TTHY_HUMAN
Unclassified
---
A/B/C/D
V
94
A
70
UniProt
VAR_007588
A
117
G
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
97
G
71
UniProt
VAR_038982
A
117
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
97
S
72
UniProt
VAR_007589
G
121
S
TTHY_HUMAN
Polymorphism
---
A/B/C/D
G
101
S
73
UniProt
VAR_007590
P
122
R
TTHY_HUMAN
Polymorphism
---
A/B/C/D
P
102
R
74
UniProt
VAR_007591
R
124
C
TTHY_HUMAN
Polymorphism
---
A/B/C/D
R
104
C
75
UniProt
VAR_038983
R
124
H
TTHY_HUMAN
Polymorphism
121918095
A/B/C/D
R
104
H
76
UniProt
VAR_038984
T
126
N
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
T
106
N
77
UniProt
VAR_038985
I
127
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
107
M
78
UniProt
VAR_007592
I
127
V
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
I
107
V
79
UniProt
VAR_007593
A
129
T
TTHY_HUMAN
Disease (DTTRH)
---
A/B/C/D
A
109
T
80
UniProt
VAR_007594
L
131
M
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
L
111
M
81
UniProt
VAR_007595
Y
134
C
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
Y
114
C
82
UniProt
VAR_007598
Y
134
H
TTHY_HUMAN
Disease (CTS1)
---
A/B/C/D
Y
114
H
83
UniProt
VAR_007596
Y
136
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
Y
116
S
84
UniProt
VAR_007597
Y
136
V
TTHY_HUMAN
Unclassified
---
A/B/C/D
Y
116
V
85
UniProt
VAR_007599
T
139
M
TTHY_HUMAN
Polymorphism
28933981
A/B/C/D
T
119
M
86
UniProt
VAR_038986
A
140
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
A
120
S
87
UniProt
VAR_038987
V
142
A
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
V
122
A
88
UniProt
VAR_007600
V
142
I
TTHY_HUMAN
Disease (AMYL-TTR)
28933980
A/B/C/D
V
122
I
89
UniProt
VAR_038988
N
144
S
TTHY_HUMAN
Disease (AMYL-TTR)
---
A/B/C/D
N
124
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 10)
Info
All PROSITE Patterns/Profiles
1: LIPOCALIN (E:14-27,F:14-27)
2: TRANSTHYRETIN_1 (A:15-30,B:15-30,C:15-30,D:15-30)
3: TRANSTHYRETIN_2 (A:105-117,B:105-117,C:105-117,D:10...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPOCALIN
PS00213
Lipocalin signature.
RET4_HUMAN
32-45
2
E:14-27
F:14-27
2
TRANSTHYRETIN_1
PS00768
Transthyretin signature 1.
TTHY_HUMAN
35-50
4
A:15-30
B:15-30
C:15-30
D:15-30
3
TRANSTHYRETIN_2
PS00769
Transthyretin signature 2.
TTHY_HUMAN
125-137
4
A:105-117
B:105-117
C:105-117
D:105-117
[
close PROSITE info
]
Exons
(8, 22)
Info
All Exons
Exon 1.2 (A:9-47 | B:9-47 | C:4-47 | D:10-47)
Exon 1.3a (A:47-92 | B:47-92 | C:47-92 | D:47...)
Exon 1.8a (A:93-124 | B:93-124 | C:93-124 | D...)
Exon 2.4a (E:1-19 | F:1-19)
Exon 2.5a (E:20-65 | F:20-65)
Exon 2.6 (E:65-101 | F:65-101)
Exon 2.8a (E:101-172 | F:101-172)
Exon 2.9c (E:172-176 | F:172-176)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3a
03: Boundary 1.3a/1.8a
04: Boundary 1.8a/-
05: Boundary 2.2a/2.4a
06: Boundary 2.4a/2.5a
07: Boundary 2.5a/2.6
08: Boundary 2.6/2.8a
09: Boundary 2.8a/2.9c
10: Boundary 2.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000237014
1a
ENSE00001836564
chr18:
29171689-29171934
246
TTHY_HUMAN
1-23
23
0
-
-
1.2
ENST00000237014
2
ENSE00000796938
chr18:
29172859-29172989
131
TTHY_HUMAN
24-67
44
4
A:9-47
B:9-47
C:4-47
D:10-47
39
39
44
38
1.3a
ENST00000237014
3a
ENSE00000796939
chr18:
29175083-29175218
136
TTHY_HUMAN
67-112
46
4
A:47-92
B:47-92
C:47-92
D:47-92
46
46
46
46
1.8a
ENST00000237014
8a
ENSE00001827041
chr18:
29178531-29178974
444
TTHY_HUMAN
113-147
35
4
A:93-124
B:93-124
C:93-124
D:93-124
32
32
32
32
2.2a
ENST00000371467
2a
ENSE00001455291
chr10:
95361420-95361119
302
RET4_HUMAN
-
0
0
-
-
2.4a
ENST00000371467
4a
ENSE00001455290
chr10:
95360803-95360675
129
RET4_HUMAN
1-37
37
2
E:1-19
F:1-19
19
19
2.5a
ENST00000371467
5a
ENSE00000932979
chr10:
95360560-95360424
137
RET4_HUMAN
38-83
46
2
E:20-65
F:20-65
46
46
2.6
ENST00000371467
6
ENSE00000932978
chr10:
95360256-95360150
107
RET4_HUMAN
83-119
37
2
E:65-101
F:65-101
37
37
2.8a
ENST00000371467
8a
ENSE00000932977
chr10:
95353792-95353580
213
RET4_HUMAN
119-190
72
2
E:101-172
F:101-172
72
72
2.9c
ENST00000371467
9c
ENSE00001455294
chr10:
95351869-95351444
426
RET4_HUMAN
190-201
12
2
E:172-176
F:172-176
5
5
[
close EXON info
]
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2wqae_ (E:)
1b: SCOP_d2wqaf_ (F:)
2a: SCOP_d2wqaa_ (A:)
2b: SCOP_d2wqab_ (B:)
2c: SCOP_d2wqac_ (C:)
2d: SCOP_d2wqad_ (D:)
View:
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(
)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Retinol binding protein-like
(261)
Protein domain
:
Retinol binding protein
(23)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2wqae_
E:
1b
d2wqaf_
F:
Fold
:
Prealbumin-like
(433)
Superfamily
:
Transthyretin (synonym: prealbumin)
(211)
Family
:
Transthyretin (synonym: prealbumin)
(198)
Protein domain
:
Transthyretin (synonym: prealbumin)
(194)
Human (Homo sapiens) [TaxId: 9606]
(184)
2a
d2wqaa_
A:
2b
d2wqab_
B:
2c
d2wqac_
C:
2d
d2wqad_
D:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2wqaE00 (E:1-176)
1b: CATH_2wqaF00 (F:1-176)
2a: CATH_2wqaA00 (A:9-124)
2b: CATH_2wqaD00 (D:10-124)
2c: CATH_2wqaB00 (B:1-124)
2d: CATH_2wqaC00 (C:4-124)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
2wqaE00
E:1-176
1b
2wqaF00
F:1-176
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.180, no name defined]
(150)
Human (Homo sapiens)
(131)
2a
2wqaA00
A:9-124
2b
2wqaD00
D:10-124
2c
2wqaB00
B:1-124
2d
2wqaC00
C:4-124
[
close CATH info
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Lipocalin_2wqaF01 (F:21-170)
1b: PFAM_Lipocalin_2wqaF02 (F:21-170)
2a: PFAM_Transthyretin_2wqaD01 (D:10-121)
2b: PFAM_Transthyretin_2wqaD02 (D:10-121)
2c: PFAM_Transthyretin_2wqaD03 (D:10-121)
2d: PFAM_Transthyretin_2wqaD04 (D:10-121)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Calycin
(163)
Family
:
Lipocalin
(123)
Homo sapiens (Human)
(41)
1a
Lipocalin-2wqaF01
F:21-170
1b
Lipocalin-2wqaF02
F:21-170
Clan
:
Transthyretin
(88)
Family
:
Transthyretin
(45)
Homo sapiens (Human)
(36)
2a
Transthyretin-2wqaD01
D:10-121
2b
Transthyretin-2wqaD02
D:10-121
2c
Transthyretin-2wqaD03
D:10-121
2d
Transthyretin-2wqaD04
D:10-121
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