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2WQ5
Biol. Unit 1
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Asym.Unit (31 KB)
Biol.Unit 1 (69 KB)
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(1)
Title
:
NON-ANTIBIOTIC PROPERTIES OF TETRACYCLINES: STRUCTURAL BASIS FOR INHIBITION OF SECRETORY PHOSPHOLIPASE A2.
Authors
:
D. Dalm, G. J. Palm, W. Hinrichs
Date
:
13 Aug 09 (Deposition) - 23 Mar 10 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Hydrolase, Minocycline, Phospholipase, Metal-Binding, Lipid Degradation, Calcium Binding Loop, Carboxylic Ester Hydrolase
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Reference
:
D. Dalm, G. J. Palm, A. Aleksandrov, T. Simonson, W. Hinrichs
Non-Antibiotic Properties Of Tetracyclines: Structural Basi For Inhibition Of Secretory Phospholipase A(2).
J. Mol. Biol. V. 398 83 2010
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYL... (MIYa)
3a: SULFATE ION (SO4a)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MIY
3
Ligand/Ion
(4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE
3
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:39 , HOH A:2064
BINDING SITE FOR RESIDUE CA A 1001
2
AC2
SOFTWARE
GLN A:4 , ASN A:7 , TRP A:61 , TYR A:69 , HOH A:2161 , HOH A:2162 , HOH A:2163 , HOH A:2164
BINDING SITE FOR RESIDUE SO4 A 1002
3
AC3
SOFTWARE
LEU A:2 , TYR A:3 , TRP A:18 , ALA A:22 , GLY A:29 , ARG A:30 , PHE A:64 , HOH A:2165 , HOH A:2166 , HOH A:2167
BINDING SITE FOR RESIDUE MIY A 1120
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:43-50)
2: PA2_ASP (A:89-99)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2A2_NAJNA
43-50
3
A:43-50
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2A2_NAJNA
89-99
3
A:89-99
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
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1a: SCOP_d2wq5a_ (A:)
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
automated matches
(75)
Indian cobra (Naja naja) [TaxId: 35670]
(1)
1a
d2wq5a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2wq5A00 (A:1-119)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Indian cobra (Naja naja)
(5)
1a
2wq5A00
A:1-119
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Pfam Domains
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