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2WOX
Asym. Unit
Info
Asym.Unit (678 KB)
Biol.Unit 1 (668 KB)
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(1)
Title
:
BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA WITH NAD(P)H-CATALYTIC THIOL ADDUCT.
Authors
:
L. Gonzalez-Segura, E. Rudino-Pinera, A. G. Diaz-Sanchez, R. A. Munoz
Date
:
30 Jul 09 (Deposition) - 25 Aug 10 (Release) - 26 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase, Aldehyde Oxidation, Nadph Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. G. Diaz-Sanchez, L. Gonzalez-Segura, E. Rudino-Pinera, A. Lira-Rocha, A. Torres-Larios, R. A. Munoz-Clares
Novel Nadph-Cysteine Covalent Adduct Found In The Active Site Of An Aldehyde Dehydrogenase.
Biochem. J. V. 439 443 2011
[
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Hetero Components
(5, 35)
Info
All Hetero Components
1a: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEa)
1b: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEb)
1c: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEc)
1d: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEd)
1e: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHO... (7PEe)
2a: BETA-MERCAPTOETHANOL (BMEa)
2b: BETA-MERCAPTOETHANOL (BMEb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
5a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
5b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
5c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
5d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7PE
5
Ligand/Ion
2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL
2
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
3
GOL
16
Ligand/Ion
GLYCEROL
4
K
8
Ligand/Ion
POTASSIUM ION
5
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:149 , GLY A:150 , TRP A:152 , ASN A:153 , LYS A:176 , SER A:178 , GLU A:179 , SER A:208 , GLY A:209 , GLY A:213 , GLN A:214 , PHE A:227 , THR A:228 , GLY A:229 , GLY A:230 , THR A:233 , VAL A:237 , GLU A:252 , LEU A:253 , GLY A:254 , CYS A:286 , GLU A:387 , PHE A:389 , 7PE A:1496 , HOH A:2223
BINDING SITE FOR RESIDUE NDP A1491
02
AC2
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180
BINDING SITE FOR RESIDUE K A1492
03
AC3
SOFTWARE
LYS A:457 , GLY A:460 , LEU B:246 , HOH B:2185
BINDING SITE FOR RESIDUE K A1493
04
AC4
SOFTWARE
TRP A:161 , GLU A:252 , SER A:447 , GLU A:464 , 7PE A:1496
BINDING SITE FOR RESIDUE GOL A1494
05
AC5
SOFTWARE
LEU A:307 , GLN A:311 , LEU A:352 , CYS A:353
BINDING SITE FOR RESIDUE BME A1600
06
AC6
SOFTWARE
ARG B:210 , NDP B:1491
BINDING SITE FOR RESIDUE GOL B1490
07
AC7
SOFTWARE
ILE B:149 , GLY B:150 , TRP B:152 , ASN B:153 , LYS B:176 , SER B:178 , GLU B:179 , GLY B:207 , SER B:208 , GLY B:209 , GLY B:213 , PHE B:227 , THR B:228 , GLY B:229 , GLY B:230 , THR B:233 , GLU B:252 , LEU B:253 , GLY B:254 , CYS B:286 , GLU B:387 , PHE B:389 , LEU B:415 , GOL B:1490 , GOL B:1495 , HOH B:2163 , HOH B:2195 , HOH B:2258 , HOH B:2259 , HOH B:2260
BINDING SITE FOR RESIDUE NDP B1491
08
AC8
SOFTWARE
LEU A:246 , LYS B:457 , GLY B:460
BINDING SITE FOR RESIDUE K B1493
09
AC9
SOFTWARE
TRP B:161 , GLU B:252 , CYS B:286 , SER B:447 , VAL B:453 , GLU B:464 , NDP B:1491 , HOH B:2196
BINDING SITE FOR RESIDUE GOL B1495
10
BC1
SOFTWARE
ALA B:61 , MET B:63 , ALA B:65 , ARG B:68 , HOH B:2262 , HOH B:2263 , HOH B:2264 , HOH B:2265 , HOH D:2106
BINDING SITE FOR RESIDUE GOL B1496
11
BC2
SOFTWARE
PHE B:4 , GLN B:7 , LYS B:187 , GOL B:1498 , HOH B:2002
BINDING SITE FOR RESIDUE GOL B1497
12
BC3
SOFTWARE
GLU B:5 , GLN B:7 , LYS B:8 , TYR B:15 , GOL B:1497
BINDING SITE FOR RESIDUE GOL B1498
13
BC4
SOFTWARE
GLY B:12 , SER B:52 , GLU B:55 , ILE B:71 , GLY B:196 , PRO B:198 , ASP B:199
BINDING SITE FOR RESIDUE 7PE B1499
14
BC5
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180
BINDING SITE FOR RESIDUE K B1501
15
BC6
SOFTWARE
ILE C:149 , GLY C:150 , ALA C:151 , TRP C:152 , ASN C:153 , LYS C:176 , SER C:178 , GLU C:179 , SER C:208 , GLY C:209 , ARG C:210 , GLY C:213 , PHE C:227 , THR C:228 , GLY C:229 , GLY C:230 , THR C:233 , LYS C:236 , VAL C:237 , GLU C:252 , LEU C:253 , GLY C:254 , CYS C:286 , GLU C:387 , PHE C:389 , LEU C:415 , GOL C:1497 , HOH C:2352 , HOH C:2353 , HOH C:2354 , HOH C:2355
BINDING SITE FOR RESIDUE NDP C1491
16
BC7
SOFTWARE
THR C:26 , ILE C:27 , ASP C:93 , VAL C:180
BINDING SITE FOR RESIDUE K C1492
17
BC8
SOFTWARE
LYS C:457 , GLY C:460 , LEU D:246 , HOH D:2147
BINDING SITE FOR RESIDUE K C1493
18
BC9
SOFTWARE
PHE C:4 , GLN C:7 , LYS C:187
BINDING SITE FOR RESIDUE GOL C1495
19
CC1
SOFTWARE
TYR C:154 , GLN C:157 , CYS C:286 , GOL C:1497 , GOL C:1499 , HOH C:2356 , HOH C:2357 , HOH C:2358
BINDING SITE FOR RESIDUE GOL C1496
20
CC2
SOFTWARE
TRP C:161 , GLU C:252 , GLU C:464 , NDP C:1491 , GOL C:1496 , HOH C:2338
BINDING SITE FOR RESIDUE GOL C1497
21
CC3
SOFTWARE
ARG C:314 , LEU C:315 , ASP C:320 , THR C:323
BINDING SITE FOR RESIDUE GOL C1498
22
CC4
SOFTWARE
SER C:447 , GOL C:1496 , 7PE C:1501 , HOH C:2128 , HOH C:2360
BINDING SITE FOR RESIDUE GOL C1499
23
CC5
SOFTWARE
SER C:336 , GLY C:339 , TYR C:340
BINDING SITE FOR RESIDUE GOL C1500
24
CC6
SOFTWARE
LEU C:307 , GLN C:311 , LEU C:352 , CYS C:353 , HOH C:2119
BINDING SITE FOR RESIDUE BME C1600
25
CC7
SOFTWARE
ILE D:149 , GLY D:150 , TRP D:152 , ASN D:153 , LYS D:176 , SER D:178 , GLU D:179 , GLY D:207 , GLY D:209 , PHE D:227 , THR D:228 , GLY D:229 , GLY D:230 , THR D:233 , VAL D:237 , GLU D:252 , LEU D:253 , GLY D:254 , CYS D:286 , GLU D:387 , PHE D:389 , LEU D:415 , GOL D:1496 , HOH D:2235
BINDING SITE FOR RESIDUE NDP D1491
26
CC8
SOFTWARE
THR D:26 , ILE D:27 , ASP D:93 , VAL D:180
BINDING SITE FOR RESIDUE K D1492
27
CC9
SOFTWARE
LEU C:246 , HOH C:2203 , LYS D:457 , GLY D:460
BINDING SITE FOR RESIDUE K D1493
28
DC1
SOFTWARE
GLU D:5 , GLU D:6 , GLN D:7 , LYS D:8 , TYR D:15 , GOL D:1497
BINDING SITE FOR RESIDUE GOL D1494
29
DC2
SOFTWARE
GLN D:157 , CYS D:286 , GOL D:1496 , HOH D:2165 , HOH D:2235
BINDING SITE FOR RESIDUE GOL D1495
30
DC3
SOFTWARE
GLU D:252 , CYS D:286 , SER D:447 , NDP D:1491 , GOL D:1495 , HOH D:2165
BINDING SITE FOR RESIDUE GOL D1496
31
DC4
SOFTWARE
PHE D:4 , GLU D:5 , GLN D:7 , LYS D:187 , GOL D:1494
BINDING SITE FOR RESIDUE GOL D1497
32
DC5
SOFTWARE
ALA A:122 , ARG A:140 , ALA A:471 , ALA D:122
BINDING SITE FOR RESIDUE 7PE A1495
33
DC6
SOFTWARE
TYR A:154 , GLN A:157 , TRP A:161 , NDP A:1491 , GOL A:1494 , HOH A:2214 , HOH A:2224
BINDING SITE FOR RESIDUE 7PE A1496
34
DC7
SOFTWARE
GLN B:157 , GLY B:445 , SER B:447
BINDING SITE FOR RESIDUE 7PE B1500
35
DC8
SOFTWARE
MET C:276 , PHE C:280 , THR C:287 , ASN C:288 , TRP C:444 , GLY C:445 , GOL C:1499 , HOH C:2361 , HOH C:2362 , HOH C:2363 , TYR D:486 , ALA D:487 , HOH D:2228
BINDING SITE FOR RESIDUE 7PE C1501
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258,C:251-258,D:25...)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290,C:279-290,D:27...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
A:251-258
B:251-258
C:251-258
D:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
A:279-290
B:279-290
C:279-290
D:279-290
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2woxa_ (A:)
1b: SCOP_d2woxb_ (B:)
1c: SCOP_d2woxc_ (C:)
1d: SCOP_d2woxd_ (D:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d2woxa_
A:
1b
d2woxb_
B:
1c
d2woxc_
C:
1d
d2woxd_
D:
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2woxA01 (A:2-254)
1b: CATH_2woxC01 (C:2-254)
1c: CATH_2woxD01 (D:2-254)
1d: CATH_2woxB01 (B:2-254)
2a: CATH_2woxA02 (A:255-448)
2b: CATH_2woxC02 (C:255-448)
2c: CATH_2woxD02 (D:255-448)
2d: CATH_2woxB02 (B:255-448)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
1a
2woxA01
A:2-254
1b
2woxC01
C:2-254
1c
2woxD01
D:2-254
1d
2woxB01
B:2-254
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
2a
2woxA02
A:255-448
2b
2woxC02
C:255-448
2c
2woxD02
D:255-448
2d
2woxB02
B:255-448
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aldedh_2woxD01 (D:15-479)
1b: PFAM_Aldedh_2woxD02 (D:15-479)
1c: PFAM_Aldedh_2woxD03 (D:15-479)
1d: PFAM_Aldedh_2woxD04 (D:15-479)
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Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Pseudomonas aeruginosa
(3)
1a
Aldedh-2woxD01
D:15-479
1b
Aldedh-2woxD02
D:15-479
1c
Aldedh-2woxD03
D:15-479
1d
Aldedh-2woxD04
D:15-479
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