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2WO3
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EPHA4-EPHRINA2 COMPLEX
Authors
:
T. A. Bowden, A. R. Aricescu, J. E. Nettleship, C. Siebold, N. Rahman-Hu R. J. Owens, D. I. Stuart, E. Y. Jones
Date
:
21 Jul 09 (Deposition) - 27 Oct 09 (Release) - 23 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transferase-Signaling Protein Complex, Efn, Eph, Epha4, Kinase, Ephrin, Complex, Membrane, Cell Surface Receptor, Tyrosine-Protein Kinase, Glycoprotein, Ephrina2
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. A. Bowden, A. R. Aricescu, J. E. Nettleship, C. Siebold, N. Rahman-Huq, R. J. Owens, D. I. Stuart, E. Y. Jones
Structural Plasticity Of Eph-Receptor A4 Facilitates Cross-Class Ephrin Signalling
Structure V. 17 1386 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR B:40 , ASN B:42 , ASN B:45 , PRO B:74 , HIS B:75 , TYR B:76
BINDING SITE FOR CHAIN B OF SUGAR BOUND TO ASN B 42 RESIDUES 1175 TO 1176
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:30-202)
2: EPHRIN_RBD_2 (B:34-173)
3: EPHRIN_RBD_1 (B:125-152)
4: RECEPTOR_TYR_KIN_V_1 (A:185-202)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHA4_HUMAN
30-209
1
A:30-202
2
EPHRIN_RBD_2
PS51551
Ephrin receptor-binding (ephrin RBD) domain profile.
EFNA2_HUMAN
34-174
1
B:34-173
3
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNA2_HUMAN
125-152
1
B:125-152
4
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHA4_HUMAN
185-205
1
A:185-202
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2wo3b_ (B:)
2a: SCOP_d2wo3a_ (A:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Ephrin ectodomain
(11)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2wo3b_
B:
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Ephrin receptor ligand binding domain
(15)
Protein domain
:
automated matches
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d2wo3a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2wo3B00 (B:33-174)
2a: CATH_2wo3A00 (A:28-203)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Human (Homo sapiens)
(5)
1a
2wo3B00
B:33-174
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
2a
2wo3A00
A:28-203
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ephrin_2wo3B01 (B:33-174)
2a: PFAM_Ephrin_lbd_2wo3A01 (A:30-202)
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Clans
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)
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)
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)
Clan
:
CU_oxidase
(192)
Family
:
Ephrin
(10)
Homo sapiens (Human)
(7)
1a
Ephrin-2wo3B01
B:33-174
Clan
:
GBD
(153)
Family
:
Ephrin_lbd
(12)
Homo sapiens (Human)
(9)
2a
Ephrin_lbd-2wo3A01
A:30-202
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Asymmetric Unit 1
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