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Getting 'Biological Unit' information from database.
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Asym. Unit
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Asym.Unit (300 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
COMPLEX BETWEEN C1Q GLOBULAR HEADS AND DEOXYRIBOSE
Authors
:
V. Garlatti, A. Chouquet, T. Lunardi, N. M. Thielens, G. J. Arlaud, C. Gaboriaud
Date
:
20 Jul 09 (Deposition) - 26 May 10 (Release) - 14 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Immune System, C1Q, Secreted, Collagen, Complement, Recognition, Disulfide Bond, Innate Immunity, Immune Response, Pyrrolidone Carboxylic Acid, Disease Mutation, Complement Pathway, Glycoprotein, Hydroxylation
(Keyword Search:
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Reference
:
V. Garlatti, A. Chouquet, T. Lunardi, R. Vives, H. Paidassi, H. Lortat-Jacob, N. M. Thielens, G. J. Arlaud, C. Gaboriaud
Cutting Edge: C1Q Binds Deoxyribose And Heparan Sulfate Through Neighboring Sites Of Its Recognition Domain.
J. Immunol. V. 185 808 2010
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 2-DEOXY-BETA-D-ERYTHRO-PENTOFURANO... (2DRa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2DR
1
Ligand/Ion
2-DEOXY-BETA-D-ERYTHRO-PENTOFURANOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:112 , ASN A:124 , HOH A:2020 , HOH A:2192 , HOH A:2193 , HOH A:2195 , HOH A:2196 , HOH A:2197
BINDING SITE FOR RESIDUE NAG A1224
2
AC2
SOFTWARE
GLN A:177 , HOH A:2136 , ASP B:172 , TYR B:173 , GLN B:179 , HOH C:2140
BINDING SITE FOR RESIDUE CA B1225
3
AC3
SOFTWARE
ARG C:98 , THR C:100 , ARG C:111 , ASN C:113 , HOH C:2061 , HOH C:2192 , HOH C:2193 , HOH C:2194 , HOH C:2195 , HOH C:2196 , VAL D:161 , ARG D:162 , ARG D:163
BINDING SITE FOR RESIDUE 2DR C1218
4
AC4
SOFTWARE
ASP D:112 , ASN D:124 , HOH D:2044 , HOH D:2188 , HOH D:2189 , HOH D:2190 , HOH D:2191 , HOH D:2193
BINDING SITE FOR RESIDUE NAG D1224
5
AC5
SOFTWARE
GLN D:177 , HOH D:2123 , ASP E:172 , TYR E:173 , GLN E:179 , HOH F:2122
BINDING SITE FOR RESIDUE CA E1225
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035551 (A96T, chain B/E, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035551
A
123
T
C1QB_HUMAN
Unclassified
---
B/E
A
96
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.5c (B:92-224 (gaps) | E:93-224 (gaps))
Exon 2.3b (C:89-217 | F:89-217)
Exon 3.4c (A:90-223 (gaps) | D:90-223)
View:
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All Exon Boundaries
1: Boundary 1.4/1.5c
2: Boundary 1.5c/-
3: Boundary 2.2/2.3b
4: Boundary 2.3b/-
5: Boundary 3.3b/3.4c
6: Boundary 3.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000314933
2a
ENSE00001464096
chr1:
22979474-22979796
323
C1QB_HUMAN
-
0
0
-
-
1.4
ENST00000314933
4
ENSE00001273267
chr1:
22985933-22986136
204
C1QB_HUMAN
1-63
63
0
-
-
1.5c
ENST00000314933
5c
ENSE00001210122
chr1:
22987305-22988031
727
C1QB_HUMAN
63-253
191
2
B:92-224 (gaps)
E:93-224 (gaps)
133
132
2.1a
ENST00000374640
1a
ENSE00001464107
chr1:
22970123-22970207
85
C1QC_HUMAN
-
0
0
-
-
2.2
ENST00000374640
2
ENSE00001464106
chr1:
22970504-22970697
194
C1QC_HUMAN
1-61
61
0
-
-
2.3b
ENST00000374640
3b
ENSE00001542062
chr1:
22973720-22974603
884
C1QC_HUMAN
61-245
185
2
C:89-217
F:89-217
129
129
3.1
ENST00000374642
1
ENSE00001413929
chr1:
22962999-22963195
197
C1QA_HUMAN
-
0
0
-
-
3.3b
ENST00000374642
3b
ENSE00001464114
chr1:
22964103-22964272
170
C1QA_HUMAN
1-55
55
0
-
-
3.4c
ENST00000374642
4c
ENSE00001548747
chr1:
22965326-22966101
776
C1QA_HUMAN
55-245
191
2
A:90-223 (gaps)
D:90-223
134
134
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2wnvb_ (B:)
1b: SCOP_d2wnve_ (E:)
2a: SCOP_d2wnva_ (A:)
2b: SCOP_d2wnvd_ (D:)
3a: SCOP_d2wnvc_ (C:)
3b: SCOP_d2wnvf_ (F:)
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Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
automated matches
(12)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2wnvb_
B:
1b
d2wnve_
E:
Protein domain
:
Complement c1q globular head, A chain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d2wnva_
A:
2b
d2wnvd_
D:
Protein domain
:
Complement c1q globular head, C chain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d2wnvc_
C:
3b
d2wnvf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2wnvD00 (D:90-223)
1b: CATH_2wnvA00 (A:90-223)
1c: CATH_2wnvE00 (E:93-224)
1d: CATH_2wnvC00 (C:89-217)
1e: CATH_2wnvF00 (F:89-217)
1f: CATH_2wnvB00 (B:92-224)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
2wnvD00
D:90-223
1b
2wnvA00
A:90-223
1c
2wnvE00
E:93-224
1d
2wnvC00
C:89-217
1e
2wnvF00
F:89-217
1f
2wnvB00
B:92-224
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_C1q_2wnvD01 (D:94-219)
1b: PFAM_C1q_2wnvD02 (D:94-219)
1c: PFAM_C1q_2wnvE01 (E:96-220)
1d: PFAM_C1q_2wnvE02 (E:96-220)
1e: PFAM_C1q_2wnvF01 (F:93-214)
1f: PFAM_C1q_2wnvF02 (F:93-214)
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)
Clan
:
C1q_TNF
(45)
Family
:
C1q
(8)
Homo sapiens (Human)
(7)
1a
C1q-2wnvD01
D:94-219
1b
C1q-2wnvD02
D:94-219
1c
C1q-2wnvE01
E:96-220
1d
C1q-2wnvE02
E:96-220
1e
C1q-2wnvF01
F:93-214
1f
C1q-2wnvF02
F:93-214
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