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2WNU
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
COMPLEX BETWEEN C1Q GLOBULAR HEADS AND HEPARAN SULFATE
Authors
:
V. Garlatti, A. Chouquet, T. Lunardi, N. M. Thielens, G. J. Arlaud, C. Gaboriaud
Date
:
20 Jul 09 (Deposition) - 26 May 10 (Release) - 14 Jul 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: D,E,F (1x)
Biol. Unit 2: A,B,C (1x)
Keywords
:
Collagen, Innate Immunity, Immune Response, Pyrrolidone Carboxylic Acid, Immune System, Disease Mutation, Complement Pathway, Glycoprotein, Hydroxylation
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Reference
:
V. Garlatti, A. Chouquet, T. Lunardi, R. Vives, H. Paidassi, H. Lortat-Jacob, N. M. Thielens, G. J. Arlaud, C. Gaboriaud
Cutting Edge: C1Q Binds Deoxyribose And Heparan Sulfate Through Neighboring Sites Of Its Recognition Domain.
J. Immunol. V. 185 808 2010
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 2-O-SULFO-BETA-L-ALTROPYRANURONIC ... (IDUa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
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No.
Name
Count
Type
Full Name
1
IDU
1
Ligand/Ion
2-O-SULFO-BETA-L-ALTROPYRANURONIC ACID
2
NAG
-1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SGN
1
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LYS F:129 , GLY F:158 , TRP F:190 , SGN F:1219
BINDING SITE FOR RESIDUE IDU F1218
2
AC3
SOFTWARE
LYS D:200 , SER F:108 , LEU F:109 , TYR F:155 , TRP F:190 , ALA F:192 , IDU F:1218 , HOH F:2035
BINDING SITE FOR RESIDUE SGN F1219
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035551 (A96T, chain E, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035551
A
123
T
C1QB_HUMAN
Unclassified
---
E
A
96
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d2wnub_ (B:)
1b: SCOP_d2wnue_ (E:)
2a: SCOP_d2wnua_ (A:)
2b: SCOP_d2wnud_ (D:)
3a: SCOP_d2wnuc_ (C:)
3b: SCOP_d2wnuf_ (F:)
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Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
automated matches
(12)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2wnub_
B:
1b
d2wnue_
E:
Protein domain
:
Complement c1q globular head, A chain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d2wnua_
A:
2b
d2wnud_
D:
Protein domain
:
Complement c1q globular head, C chain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
3a
d2wnuc_
C:
3b
d2wnuf_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2wnuA00 (A:90-222)
1b: CATH_2wnuB00 (B:92-224)
1c: CATH_2wnuE00 (E:92-224)
1d: CATH_2wnuC00 (C:89-217)
1e: CATH_2wnuF00 (F:89-217)
1f: CATH_2wnuD00 (D:90-222)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.40, no name defined]
(56)
Human (Homo sapiens)
(38)
1a
2wnuA00
A:90-222
1b
2wnuB00
B:92-224
1c
2wnuE00
E:92-224
1d
2wnuC00
C:89-217
1e
2wnuF00
F:89-217
1f
2wnuD00
D:90-222
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_C1q_2wnuD01 (D:94-219)
1b: PFAM_C1q_2wnuD02 (D:94-219)
1c: PFAM_C1q_2wnuE01 (E:96-220)
1d: PFAM_C1q_2wnuE02 (E:96-220)
1e: PFAM_C1q_2wnuF01 (F:93-214)
1f: PFAM_C1q_2wnuF02 (F:93-214)
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Clan
:
C1q_TNF
(45)
Family
:
C1q
(8)
Homo sapiens (Human)
(7)
1a
C1q-2wnuD01
D:94-219
1b
C1q-2wnuD02
D:94-219
1c
C1q-2wnuE01
E:96-220
1d
C1q-2wnuE02
E:96-220
1e
C1q-2wnuF01
F:93-214
1f
C1q-2wnuF02
F:93-214
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Asymmetric Unit 1
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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