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2WN9
Asym. Unit
Info
Asym.Unit (204 KB)
Biol.Unit 1 (196 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APLYSIA ACHBP IN COMPLEX WITH 4-0H-DMXBA
Authors
:
G. Sulzenbacher, R. Hibbs, J. Shi, T. Talley, S. Conrod, W. Kem, P. Taylor, P. Marchot, Y. Bourne
Date
:
07 Jul 09 (Deposition) - 01 Sep 09 (Release) - 03 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Receptor, 4-0H-Dmxba, Acetylcholine Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Hibbs, G. Sulzenbacher, J. Shi, T. Talley, S. Conrod, W. Kem, W. Kem, P. Taylor, P. Marchot, Y. Bourne
Structural Determinants For Interaction Of Partial Agonists With Acetylcholine Binding Protein And Neuronal Alpha7 Nicotinic Acetylcholine Receptor.
Embo J. V. 28 3040 2009
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4a: 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-... (ZY5a)
4b: 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-... (ZY5b)
4c: 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-... (ZY5c)
4d: 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-... (ZY5d)
4e: 4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-... (ZY5e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZY5
5
Ligand/Ion
4-[(E)-5,6-DIHYDRO-2,3'-BIPYRIDIN-3(4H)-YLIDENEMETHYL]-3-METHOXYPHENOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:93 , TRP A:147 , THR E:36 , TYR E:55 , ILE E:118 , ASP E:164 , SER E:166 , SER E:167 , HOH E:2032
BINDING SITE FOR RESIDUE ZY5 A 301
02
AC2
SOFTWARE
ASN A:74 , NAG A:402
BINDING SITE FOR RESIDUE NAG A 401
03
AC3
SOFTWARE
NAG A:401 , BMA A:403 , MAN A:405 , HOH A:2179
BINDING SITE FOR RESIDUE NAG A 402
04
AC4
SOFTWARE
NAG A:402 , MAN A:404 , MAN A:405 , HOH A:2178 , ASN C:70
BINDING SITE FOR RESIDUE BMA A 403
05
AC5
SOFTWARE
BMA A:403 , HOH A:2179 , ARG C:8 , GLU C:71 , GLU C:135
BINDING SITE FOR RESIDUE MAN A 404
06
AC6
SOFTWARE
NAG A:402 , BMA A:403
BINDING SITE FOR RESIDUE MAN A 405
07
AC7
SOFTWARE
THR A:36 , ILE A:118 , ASP A:164 , SER A:166 , SER A:167 , HOH A:2053 , HOH A:2125 , TYR B:93 , TRP B:147
BINDING SITE FOR RESIDUE ZY5 B 301
08
AC8
SOFTWARE
ASN B:74
BINDING SITE FOR RESIDUE NAG B 401
09
AC9
SOFTWARE
THR B:36 , ILE B:118 , ASP B:164 , SER B:166 , SER B:167 , HOH B:2100 , TYR C:93 , TRP C:147 , TYR C:188 , CYS C:190 , TYR C:195
BINDING SITE FOR RESIDUE ZY5 C 301
10
BC1
SOFTWARE
THR C:36 , TYR C:55 , GLN C:57 , ILE C:118 , ASP C:164 , SER C:166 , SER C:167 , HOH C:2025 , HOH C:2091 , TYR D:93 , TRP D:147
BINDING SITE FOR RESIDUE ZY5 D 301
11
BC2
SOFTWARE
THR D:36 , GLN D:57 , ILE D:118 , ASP D:164 , SER D:166 , SER D:167 , HOH D:2090 , TYR E:93 , TRP E:147 , TYR E:195
BINDING SITE FOR RESIDUE ZY5 E 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d2wn9a_ (A:)
1b: SCOP_d2wn9b_ (B:)
1c: SCOP_d2wn9c_ (C:)
1d: SCOP_d2wn9d_ (D:)
1e: SCOP_d2wn9e_ (E:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
California sea hare (Aplysia californica) [TaxId: 6500]
(36)
1a
d2wn9a_
A:
1b
d2wn9b_
B:
1c
d2wn9c_
C:
1d
d2wn9d_
D:
1e
d2wn9e_
E:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_Neur_chan_LBD_2wn9E01 (E:6-207)
1b: PFAM_Neur_chan_LBD_2wn9E02 (E:6-207)
1c: PFAM_Neur_chan_LBD_2wn9E03 (E:6-207)
1d: PFAM_Neur_chan_LBD_2wn9E04 (E:6-207)
1e: PFAM_Neur_chan_LBD_2wn9E05 (E:6-207)
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Clan
:
no clan defined [family: Neur_chan_LBD]
(30)
Family
:
Neur_chan_LBD
(30)
Aplysia californica (California sea hare)
(19)
1a
Neur_chan_LBD-2wn9E01
E:6-207
1b
Neur_chan_LBD-2wn9E02
E:6-207
1c
Neur_chan_LBD-2wn9E03
E:6-207
1d
Neur_chan_LBD-2wn9E04
E:6-207
1e
Neur_chan_LBD-2wn9E05
E:6-207
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Asymmetric Unit 1
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Asym.Unit (204 KB)
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