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Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (110 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC MODULE OF A FAMILY 98 GLYCOSIDE HYDROLASE FROM STREPTOCOCCUS PNEUMONIAE SP3-BS71 (SP3GH98) IN COMPLEX WITH THE A-LEWISY PENTASACCHARIDE BLOOD GROUP ANTIGEN.
Authors
:
M. A. Higgins, G. E. Whitworth, N. El Warry, M. Randriantsoa, E. Samain, R. D. Burke, D. J. Vocadlo, A. B. Boraston
Date
:
30 Jun 09 (Deposition) - 14 Jul 09 (Release) - 28 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Blood Group, Antigen, Fucose Utilization, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Higgins, G. E. Whitworth, N. El Warry, M. Randriantsoa, E. Samain, R. D. Burke, D. J. Vocadlo, A. B. Boraston
Differential Recognition And Hydrolysis Of Host Carbohydrate-Antigens By Streptococcus Pneumoniae Family 98 Glycoside Hydrolases.
J. Biol. Chem. V. 284 26161 2009
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Ga)
1b: N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE (A2Gb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
2d: ALPHA-L-FUCOSE (FUCd)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
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No.
Name
Count
Type
Full Name
1
A2G
2
Ligand/Ion
N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2
FUC
4
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:440 , HIS A:479 , THR A:523 , THR A:557 , GLU A:710 , GAL A:2007 , NAG A:2008 , FUC A:2009 , A2G A:2010 , HOH A:3447 , HOH A:3448
BINDING SITE FOR RESIDUE FUC A2006
02
AC2
SOFTWARE
THR A:626 , TRP A:659 , TYR A:662 , GLU A:663 , FUC A:2006 , NAG A:2008 , FUC A:2009 , A2G A:2010 , HOH A:3449
BINDING SITE FOR RESIDUE GAL A2007
03
AC3
SOFTWARE
TYR A:560 , TRP A:561 , FUC A:2006 , GAL A:2007 , FUC A:2009 , HOH A:3104 , HOH A:3179
BINDING SITE FOR RESIDUE NAG A2008
04
AC4
SOFTWARE
TYR A:530 , FUC A:2006 , GAL A:2007 , NAG A:2008 , A2G A:2010 , HOH A:3051 , HOH A:3450
BINDING SITE FOR RESIDUE FUC A2009
05
AC5
SOFTWARE
ASP A:481 , TRP A:659 , GLU A:710 , HIS A:711 , PRO A:712 , LYS A:929 , FUC A:2006 , GAL A:2007 , FUC A:2009 , HOH A:3212 , HOH A:3451 , HOH A:3452 , HOH A:3453
BINDING SITE FOR RESIDUE A2G A2010
06
AC6
SOFTWARE
TYR B:440 , HIS B:479 , THR B:523 , THR B:557 , GLU B:710 , GAL B:2007 , NAG B:2008 , FUC B:2009 , A2G B:2010 , HOH B:3512 , HOH B:3513
BINDING SITE FOR RESIDUE FUC B2006
07
AC7
SOFTWARE
THR B:626 , TRP B:659 , TYR B:662 , GLU B:663 , FUC B:2006 , NAG B:2008 , FUC B:2009 , A2G B:2010 , HOH B:3514
BINDING SITE FOR RESIDUE GAL B2007
08
AC8
SOFTWARE
TYR B:560 , TRP B:561 , GLU B:663 , FUC B:2006 , GAL B:2007 , FUC B:2009 , HOH B:3187
BINDING SITE FOR RESIDUE NAG B2008
09
AC9
SOFTWARE
ALA B:524 , TYR B:530 , FUC B:2006 , GAL B:2007 , NAG B:2008 , A2G B:2010 , HOH B:3048 , HOH B:3077 , HOH B:3515 , HOH B:3516 , HOH B:3517
BINDING SITE FOR RESIDUE FUC B2009
10
BC1
SOFTWARE
ASP B:481 , TRP B:659 , GLU B:710 , HIS B:711 , PRO B:712 , LYS B:929 , FUC B:2006 , GAL B:2007 , FUC B:2009 , HOH B:3230 , HOH B:3518 , HOH B:3519 , HOH B:3520 , HOH B:3521
BINDING SITE FOR RESIDUE A2G B2010
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (221 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Biol.Unit 2 (110 KB)
Header - Biol.Unit 2
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