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2WME
Biol. Unit 2
Info
Asym.Unit (681 KB)
Biol.Unit 1 (335 KB)
Biol.Unit 2 (341 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
L. Gonzalez-Segura, E. Rudino-Pinera, R. A. Munoz-Clares, E. Horjal
Date
:
30 Jun 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Aldehyde Oxidation, Nad, Nadp Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Gonzalez-Segura, E. Rudino-Pinera, R. A. Munoz-Clares, E. Horjales
The Crystal Structure Of A Ternary Complex Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Provides New Insight Into The Reaction Mechanism And Shows A Novel Binding Mode Of The 2'- Phosphate Of Nadp(+) And A Novel Cation Binding Site.
J. Mol. Biol. V. 385 542 2009
[
close entry info
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Hetero Components
(4, 22)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
5a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
5b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
5c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
5d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
5e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
5f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
5g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
5h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
3
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GOL
14
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:150 , TRP A:152 , LYS A:176 , SER A:178 , GLU A:179 , GLY A:207 , GLY A:209 , GLY A:213 , PHE A:227 , THR A:228 , GLY A:229 , GLY A:230 , THR A:233 , VAL A:237 , BME A:1492 , GOL A:1501 , HOH A:2410 , HOH A:2411 , HOH A:2412
BINDING SITE FOR RESIDUE NAP A1491
02
AC2
SOFTWARE
GLY A:229 , LEU A:253 , GLY A:254 , CYS A:286 , GLU A:387 , NAP A:1491
BINDING SITE FOR RESIDUE BME A1492
03
AC3
SOFTWARE
THR A:26 , ILE A:27 , ASP A:93 , VAL A:180 , HOH A:2033
BINDING SITE FOR RESIDUE K A1493
04
AC4
SOFTWARE
LYS A:457 , GLY A:460 , HOH A:2376 , LEU B:246 , HOH B:2207
BINDING SITE FOR RESIDUE K A1494
05
AC5
SOFTWARE
PHE A:4 , GLU A:5 , HOH A:2413 , SER E:20 , ARG E:40 , ALA E:41 , VAL E:212
BINDING SITE FOR RESIDUE GOL A1496
06
AC6
SOFTWARE
ARG A:296 , ASP A:376 , ARG A:378 , VAL A:397 , HOH A:2311 , HOH A:2414 , HOH A:2416
BINDING SITE FOR RESIDUE GOL A1497
07
AC7
SOFTWARE
ALA A:61 , MET A:63 , ARG A:68 , HOH A:2129 , HOH A:2417 , LEU C:130 , ARG C:131 , HOH C:2126
BINDING SITE FOR RESIDUE GOL A1498
08
AC8
SOFTWARE
GLU A:6 , GLN A:7 , LYS A:8 , TYR A:15
BINDING SITE FOR RESIDUE GOL A1499
09
AC9
SOFTWARE
ASN A:153 , GLN A:157 , VAL A:285 , CYS A:286
BINDING SITE FOR RESIDUE GOL A1500
10
BC1
SOFTWARE
GLY A:209 , ARG A:210 , NAP A:1491
BINDING SITE FOR RESIDUE GOL A1501
11
BC2
SOFTWARE
ILE B:149 , GLY B:150 , TRP B:152 , LYS B:176 , SER B:178 , GLU B:179 , GLY B:207 , SER B:208 , GLY B:209 , GLY B:213 , GLN B:214 , PHE B:227 , THR B:228 , GLY B:229 , GLY B:230 , THR B:233 , VAL B:237 , HOH B:2398 , HOH B:2399 , HOH B:2400
BINDING SITE FOR RESIDUE NAP B1491
12
BC3
SOFTWARE
GLY B:229 , LEU B:253 , GLY B:254 , CYS B:286 , PHE B:389 , HOH B:2402
BINDING SITE FOR RESIDUE BME B1492
13
BC4
SOFTWARE
THR B:26 , ILE B:27 , ASP B:93 , VAL B:180 , HOH B:2042
BINDING SITE FOR RESIDUE K B1493
14
BC5
SOFTWARE
LEU A:246 , HOH A:2206 , LYS B:457 , GLY B:460 , HOH B:2365
BINDING SITE FOR RESIDUE K B1494
15
BC6
SOFTWARE
TRP B:161 , GLU B:252 , LEU B:415 , GOL B:1496 , HOH B:2370 , HOH B:2371 , HOH B:2403 , HOH B:2404
BINDING SITE FOR RESIDUE GOL B1495
16
BC7
SOFTWARE
ASN B:153 , GLN B:157 , VAL B:285 , CYS B:286 , GOL B:1495
BINDING SITE FOR RESIDUE GOL B1496
17
BC8
SOFTWARE
GLU B:5 , GLU B:6 , GLN B:7 , LYS B:8 , TYR B:15
BINDING SITE FOR RESIDUE GOL B1497
18
BC9
SOFTWARE
ILE C:149 , GLY C:150 , TRP C:152 , LYS C:176 , SER C:178 , GLU C:179 , GLY C:207 , GLY C:209 , ARG C:210 , GLY C:213 , GLN C:214 , PHE C:227 , THR C:228 , GLY C:229 , GLY C:230 , THR C:233 , HOH C:2155 , HOH C:2360 , HOH C:2361
BINDING SITE FOR RESIDUE NAP C1491
19
CC1
SOFTWARE
THR C:26 , ILE C:27 , ASP C:93 , VAL C:180 , HOH C:2032
BINDING SITE FOR RESIDUE K C1493
20
CC2
SOFTWARE
ARG A:357 , THR C:23 , GLU C:25 , LYS C:37
BINDING SITE FOR RESIDUE GOL C1495
21
CC3
SOFTWARE
LYS C:457 , GLY C:460 , LEU D:246 , HOH D:2182 , HOH D:2198
BINDING SITE FOR RESIDUE K C1494
22
CC4
SOFTWARE
PHE C:4 , GLN C:7 , LYS C:187 , HOH C:2005
BINDING SITE FOR RESIDUE GOL C1496
23
CC5
SOFTWARE
TYR C:154 , GLN C:157 , VAL C:285 , HOH C:2146 , HOH C:2363 , HOH C:2364 , HOH C:2367
BINDING SITE FOR RESIDUE GOL C1497
24
CC6
SOFTWARE
ILE D:149 , GLY D:150 , LYS D:176 , SER D:178 , GLU D:179 , GLY D:207 , GLY D:209 , GLY D:213 , PHE D:227 , GLY D:229 , GLY D:230 , THR D:233 , VAL D:237 , BME D:1492 , HOH D:2174 , HOH D:2175 , HOH D:2354 , HOH D:2355 , HOH D:2356
BINDING SITE FOR RESIDUE NAP D1491
25
CC7
SOFTWARE
ALA D:151 , GLY D:229 , GLY D:230 , GLY D:254 , CYS D:286 , GLU D:387 , NAP D:1491 , HOH D:2357 , HOH D:2358 , HOH D:2359
BINDING SITE FOR RESIDUE BME D1492
26
CC8
SOFTWARE
THR D:26 , ILE D:27 , ASP D:93 , VAL D:180
BINDING SITE FOR RESIDUE K D1493
27
CC9
SOFTWARE
LEU C:246 , GLU C:248 , HOH C:2185 , HOH C:2198 , LYS D:457 , GLY D:460
BINDING SITE FOR RESIDUE K D1494
28
DC1
SOFTWARE
GLU D:6 , GLN D:7 , LYS D:8 , TYR D:15 , HOH D:2360 , LYS F:37
BINDING SITE FOR RESIDUE GOL D1495
29
DC2
SOFTWARE
TYR D:154 , GLN D:157 , HOH D:2312 , HOH D:2361 , HOH D:2362
BINDING SITE FOR RESIDUE GOL D1496
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:251-258,B:251-258,C:251-258,D:25...)
2: ALDEHYDE_DEHYDR_CYS (A:279-290,B:279-290,C:279-290,D:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
A:251-258
B:251-258
C:251-258
D:251-258
-
-
-
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
A:279-290
B:279-290
C:279-290
D:279-290
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2wmea_ (A:)
1b: SCOP_d2wmeb_ (B:)
1c: SCOP_d2wmec_ (C:)
1d: SCOP_d2wmed_ (D:)
1e: SCOP_d2wmee_ (E:)
1f: SCOP_d2wmef_ (F:)
1g: SCOP_d2wmeg_ (G:)
1h: SCOP_d2wmeh_ (H:)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d2wmea_
A:
1b
d2wmeb_
B:
1c
d2wmec_
C:
1d
d2wmed_
D:
1e
d2wmee_
E:
1f
d2wmef_
F:
1g
d2wmeg_
G:
1h
d2wmeh_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2wmeA01 (A:2-254)
1b: CATH_2wmeB01 (B:2-254)
1c: CATH_2wmeC01 (C:2-254)
1d: CATH_2wmeD01 (D:2-254)
1e: CATH_2wmeE01 (E:2-254)
1f: CATH_2wmeF01 (F:2-254)
1g: CATH_2wmeG01 (G:2-254)
1h: CATH_2wmeH01 (H:2-254)
2a: CATH_2wmeC02 (C:255-448)
2b: CATH_2wmeE02 (E:255-448)
2c: CATH_2wmeA02 (A:255-448)
2d: CATH_2wmeB02 (B:255-448)
2e: CATH_2wmeD02 (D:255-448)
2f: CATH_2wmeF02 (F:255-448)
2g: CATH_2wmeG02 (G:255-448)
2h: CATH_2wmeH02 (H:255-448)
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Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
1a
2wmeA01
A:2-254
1b
2wmeB01
B:2-254
1c
2wmeC01
C:2-254
1d
2wmeD01
D:2-254
1e
2wmeE01
E:2-254
1f
2wmeF01
F:2-254
1g
2wmeG01
G:2-254
1h
2wmeH01
H:2-254
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
2a
2wmeC02
C:255-448
2b
2wmeE02
E:255-448
2c
2wmeA02
A:255-448
2d
2wmeB02
B:255-448
2e
2wmeD02
D:255-448
2f
2wmeF02
F:255-448
2g
2wmeG02
G:255-448
2h
2wmeH02
H:255-448
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_2wmeH01 (H:15-479)
1b: PFAM_Aldedh_2wmeH02 (H:15-479)
1c: PFAM_Aldedh_2wmeH03 (H:15-479)
1d: PFAM_Aldedh_2wmeH04 (H:15-479)
1e: PFAM_Aldedh_2wmeH05 (H:15-479)
1f: PFAM_Aldedh_2wmeH06 (H:15-479)
1g: PFAM_Aldedh_2wmeH07 (H:15-479)
1h: PFAM_Aldedh_2wmeH08 (H:15-479)
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Organisms
(
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)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Pseudomonas aeruginosa
(3)
1a
Aldedh-2wmeH01
H:15-479
1b
Aldedh-2wmeH02
H:15-479
1c
Aldedh-2wmeH03
H:15-479
1d
Aldedh-2wmeH04
H:15-479
1e
Aldedh-2wmeH05
H:15-479
1f
Aldedh-2wmeH06
H:15-479
1g
Aldedh-2wmeH07
H:15-479
1h
Aldedh-2wmeH08
H:15-479
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select residue range 5 to 10 in chain 'A'
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