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2WME
Biol. Unit 1
Info
Asym.Unit (681 KB)
Biol.Unit 1 (335 KB)
Biol.Unit 2 (341 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS AERUGINOSA
Authors
:
L. Gonzalez-Segura, E. Rudino-Pinera, R. A. Munoz-Clares, E. Horjal
Date
:
30 Jun 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: E,F,G,H (1x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Aldehyde Oxidation, Nad, Nadp Complex, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Gonzalez-Segura, E. Rudino-Pinera, R. A. Munoz-Clares, E. Horjales
The Crystal Structure Of A Ternary Complex Of Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa Provides New Insight Into The Reaction Mechanism And Shows A Novel Binding Mode Of The 2'- Phosphate Of Nadp(+) And A Novel Cation Binding Site.
J. Mol. Biol. V. 385 542 2009
[
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
4a: POTASSIUM ION (Ka)
4b: POTASSIUM ION (Kb)
4c: POTASSIUM ION (Kc)
4d: POTASSIUM ION (Kd)
4e: POTASSIUM ION (Ke)
4f: POTASSIUM ION (Kf)
4g: POTASSIUM ION (Kg)
4h: POTASSIUM ION (Kh)
4i: POTASSIUM ION (Ki)
4j: POTASSIUM ION (Kj)
4k: POTASSIUM ION (Kk)
4l: POTASSIUM ION (Kl)
4m: POTASSIUM ION (Km)
4n: POTASSIUM ION (Kn)
4o: POTASSIUM ION (Ko)
4p: POTASSIUM ION (Kp)
5a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
5b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
5c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
5d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
5e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
5f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
5g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
5h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CSO
1
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
GOL
7
Ligand/Ion
GLYCEROL
4
K
-1
Ligand/Ion
POTASSIUM ION
5
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC5 (SOFTWARE)
02: DC1 (SOFTWARE)
03: DC3 (SOFTWARE)
04: DC4 (SOFTWARE)
05: DC5 (SOFTWARE)
06: DC6 (SOFTWARE)
07: DC7 (SOFTWARE)
08: DC8 (SOFTWARE)
09: DC9 (SOFTWARE)
10: EC1 (SOFTWARE)
11: EC2 (SOFTWARE)
12: EC3 (SOFTWARE)
13: EC4 (SOFTWARE)
14: EC5 (SOFTWARE)
15: EC6 (SOFTWARE)
16: EC7 (SOFTWARE)
17: EC8 (SOFTWARE)
18: EC9 (SOFTWARE)
19: FC1 (SOFTWARE)
20: FC2 (SOFTWARE)
21: FC3 (SOFTWARE)
22: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
PHE A:4 , GLU A:5 , HOH A:2413 , SER E:20 , ARG E:40 , ALA E:41 , VAL E:212
BINDING SITE FOR RESIDUE GOL A1496
02
DC1
SOFTWARE
GLU D:6 , GLN D:7 , LYS D:8 , TYR D:15 , HOH D:2360 , LYS F:37
BINDING SITE FOR RESIDUE GOL D1495
03
DC3
SOFTWARE
ILE E:149 , GLY E:150 , TRP E:152 , LYS E:176 , SER E:178 , GLU E:179 , GLY E:207 , GLY E:209 , GLY E:213 , GLN E:214 , PHE E:227 , THR E:228 , GLY E:229 , GLY E:230 , THR E:233 , HOH E:2176 , HOH E:2182 , HOH E:2349 , HOH E:2350 , HOH E:2351 , HOH E:2352
BINDING SITE FOR RESIDUE NAP E1491
04
DC4
SOFTWARE
THR E:26 , ILE E:27 , ASP E:93 , VAL E:180 , HOH E:2034
BINDING SITE FOR RESIDUE K E1493
05
DC5
SOFTWARE
GLN E:157 , VAL E:285 , HOH E:2354 , HOH E:2355 , HOH E:2356
BINDING SITE FOR RESIDUE GOL E1495
06
DC6
SOFTWARE
LYS E:457 , GLY E:460 , HOH E:2325 , LEU F:246 , HOH F:2185
BINDING SITE FOR RESIDUE K E1494
07
DC7
SOFTWARE
ALA E:304 , LEU E:307 , HOH E:2230 , HOH E:2357
BINDING SITE FOR RESIDUE GOL E1496
08
DC8
SOFTWARE
ILE F:149 , GLY F:150 , TRP F:152 , LYS F:176 , SER F:178 , GLU F:179 , GLY F:207 , GLY F:209 , ARG F:210 , GLY F:213 , GLN F:214 , PHE F:227 , THR F:228 , GLY F:229 , GLY F:230 , THR F:233 , BME F:1492 , HOH F:2179 , HOH F:2344 , HOH F:2345
BINDING SITE FOR RESIDUE NAP F1491
09
DC9
SOFTWARE
GLY F:229 , GLY F:230 , CYS F:286 , GLU F:387 , NAP F:1491 , HOH F:2344
BINDING SITE FOR RESIDUE BME F1492
10
EC1
SOFTWARE
THR F:26 , ILE F:27 , ASP F:93 , VAL F:180 , HOH F:2036
BINDING SITE FOR RESIDUE K F1493
11
EC2
SOFTWARE
LEU E:246 , HOH E:2189 , HOH E:2207 , LYS F:457 , GLY F:460
BINDING SITE FOR RESIDUE K F1494
12
EC3
SOFTWARE
TYR F:154 , GLN F:157 , TRP F:161 , VAL F:285 , HOH F:2156 , HOH F:2346 , HOH F:2347
BINDING SITE FOR RESIDUE GOL F1495
13
EC4
SOFTWARE
ILE G:149 , GLY G:150 , TRP G:152 , LYS G:176 , SER G:178 , GLU G:179 , GLY G:207 , SER G:208 , GLY G:209 , GLY G:213 , PHE G:227 , THR G:228 , GLY G:230 , THR G:233 , VAL G:237 , BME G:1492 , HOH G:2181 , HOH G:2353 , HOH G:2354 , HOH G:2355 , HOH G:2356
BINDING SITE FOR RESIDUE NAP G1491
14
EC5
SOFTWARE
ALA G:151 , GLY G:229 , GLY G:230 , LEU G:253 , GLY G:254 , CYS G:286 , GLU G:387 , PHE G:389 , NAP G:1491 , HOH G:2149
BINDING SITE FOR RESIDUE BME G1492
15
EC6
SOFTWARE
THR G:26 , ILE G:27 , ASP G:93 , VAL G:180
BINDING SITE FOR RESIDUE K G1493
16
EC7
SOFTWARE
LYS G:457 , GLY G:460 , LEU H:246 , HOH H:2164 , HOH H:2175
BINDING SITE FOR RESIDUE K G1494
17
EC8
SOFTWARE
TRP G:161 , GLU G:252 , GOL G:1496 , HOH G:2336 , HOH G:2358 , HOH G:2359
BINDING SITE FOR RESIDUE GOL G1495
18
EC9
SOFTWARE
TYR G:154 , GLN G:157 , GOL G:1495 , HOH G:2151 , HOH G:2217
BINDING SITE FOR RESIDUE GOL G1496
19
FC1
SOFTWARE
PHE G:4 , GLN G:7 , LYS G:187 , HOH G:2360
BINDING SITE FOR RESIDUE GOL G1497
20
FC2
SOFTWARE
GLY H:150 , TRP H:152 , LYS H:176 , SER H:178 , GLU H:179 , GLY H:207 , SER H:208 , GLY H:209 , PHE H:227 , GLY H:229 , GLY H:230 , THR H:233 , VAL H:237 , PHE H:389 , HOH H:2315 , HOH H:2316
BINDING SITE FOR RESIDUE NAP H1491
21
FC3
SOFTWARE
THR H:26 , ILE H:27 , ASP H:93 , VAL H:180 , HOH H:2080
BINDING SITE FOR RESIDUE K H1493
22
FC4
SOFTWARE
LEU G:246 , HOH G:2186 , HOH G:2197 , LYS H:457 , GLY H:460
BINDING SITE FOR RESIDUE K H1494
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (E:251-258,F:251-258,G:251-258,H:25...)
2: ALDEHYDE_DEHYDR_CYS (E:279-290,F:279-290,G:279-290,H:27...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
BETB_PSEAE
251-258
4
-
-
-
-
E:251-258
F:251-258
G:251-258
H:251-258
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
BETB_PSEAE
279-290
4
-
-
-
-
E:279-290
F:279-290
G:279-290
H:279-290
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2wmea_ (A:)
1b: SCOP_d2wmeb_ (B:)
1c: SCOP_d2wmec_ (C:)
1d: SCOP_d2wmed_ (D:)
1e: SCOP_d2wmee_ (E:)
1f: SCOP_d2wmef_ (F:)
1g: SCOP_d2wmeg_ (G:)
1h: SCOP_d2wmeh_ (H:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
automated matches
(88)
Protein domain
:
automated matches
(88)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d2wmea_
A:
1b
d2wmeb_
B:
1c
d2wmec_
C:
1d
d2wmed_
D:
1e
d2wmee_
E:
1f
d2wmef_
F:
1g
d2wmeg_
G:
1h
d2wmeh_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2wmeA01 (A:2-254)
1b: CATH_2wmeB01 (B:2-254)
1c: CATH_2wmeC01 (C:2-254)
1d: CATH_2wmeD01 (D:2-254)
1e: CATH_2wmeE01 (E:2-254)
1f: CATH_2wmeF01 (F:2-254)
1g: CATH_2wmeG01 (G:2-254)
1h: CATH_2wmeH01 (H:2-254)
2a: CATH_2wmeC02 (C:255-448)
2b: CATH_2wmeE02 (E:255-448)
2c: CATH_2wmeA02 (A:255-448)
2d: CATH_2wmeB02 (B:255-448)
2e: CATH_2wmeD02 (D:255-448)
2f: CATH_2wmeF02 (F:255-448)
2g: CATH_2wmeG02 (G:255-448)
2h: CATH_2wmeH02 (H:255-448)
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Topologies
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
1a
2wmeA01
A:2-254
1b
2wmeB01
B:2-254
1c
2wmeC01
C:2-254
1d
2wmeD01
D:2-254
1e
2wmeE01
E:2-254
1f
2wmeF01
F:2-254
1g
2wmeG01
G:2-254
1h
2wmeH01
H:2-254
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Pseudomonas aeruginosa. Organism_taxid: 287.
(2)
2a
2wmeC02
C:255-448
2b
2wmeE02
E:255-448
2c
2wmeA02
A:255-448
2d
2wmeB02
B:255-448
2e
2wmeD02
D:255-448
2f
2wmeF02
F:255-448
2g
2wmeG02
G:255-448
2h
2wmeH02
H:255-448
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Aldedh_2wmeH01 (H:15-479)
1b: PFAM_Aldedh_2wmeH02 (H:15-479)
1c: PFAM_Aldedh_2wmeH03 (H:15-479)
1d: PFAM_Aldedh_2wmeH04 (H:15-479)
1e: PFAM_Aldedh_2wmeH05 (H:15-479)
1f: PFAM_Aldedh_2wmeH06 (H:15-479)
1g: PFAM_Aldedh_2wmeH07 (H:15-479)
1h: PFAM_Aldedh_2wmeH08 (H:15-479)
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Clans
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Families
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)
Organisms
(
)
(
)
Clan
:
ALDH-like
(49)
Family
:
Aldedh
(45)
Pseudomonas aeruginosa
(3)
1a
Aldedh-2wmeH01
H:15-479
1b
Aldedh-2wmeH02
H:15-479
1c
Aldedh-2wmeH03
H:15-479
1d
Aldedh-2wmeH04
H:15-479
1e
Aldedh-2wmeH05
H:15-479
1f
Aldedh-2wmeH06
H:15-479
1g
Aldedh-2wmeH07
H:15-479
1h
Aldedh-2wmeH08
H:15-479
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