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2WM3
Asym. Unit
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Asym.Unit (62 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1 IN COMPLEX WITH NIFLUMIC ACID
Authors
:
C. Bhatia, W. W. Yue, F. Niesen, E. Pilka, E. Ugochukwu, P. Savitsky, V. H A. K. Roos, P. Filippakopoulos, F. Von Delft, T. Heightman, C. Arrows J. Weigelt, A. Edwards, C. Bountra, U. Oppermann
Date
:
29 Jun 09 (Deposition) - 04 Aug 09 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Bhatia, W. W. Yue, E. Pilka, E. Ugochukwu, P. Savitsky, V. Hozjan, A. K. Roos, P. Filippakopoulos, F. Von Delft, T. Heightman, C. Arrowsmith, J. Weigelt, A. Edwards, C. Bountra, U. Oppermann
Crystal Structure Of Nmra-Like Family Domain Containing Protein 1 In Complex With Niflumic Acid
To Be Published
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL; PROPANE-1,2,3-TRIOL (GOLa)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
4a: 2-{[3-(TRIFLUOROMETHYL)PHENYL]AMIN... (NFLa)
4b: 2-{[3-(TRIFLUOROMETHYL)PHENYL]AMIN... (NFLb)
5a: PHOSPHATE ION (PO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL; PROPANE-1,2,3-TRIOL
3
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
4
NFL
2
Ligand/Ion
2-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}NICOTINIC ACID
5
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:11 , THR A:13 , GLY A:14 , ALA A:15 , GLN A:16 , THR A:36 , ARG A:37 , LYS A:41 , GLY A:57 , ASP A:58 , GLN A:59 , THR A:79 , ASN A:80 , TYR A:81 , GLU A:90 , GLN A:93 , LYS A:133 , LEU A:152 , PRO A:153 , CYS A:154 , TYR A:155 , ASN A:158 , NFL A:1300 , HOH A:2033 , HOH A:2034 , HOH A:2256 , HOH A:2257 , HOH A:2258 , HOH A:2259 , HOH A:2260 , HOH A:2261 , HOH A:2262 , HOH A:2263 , HOH A:2264
BINDING SITE FOR RESIDUE NAP A1299
2
AC2
SOFTWARE
TRP A:82 , HIS A:129 , CYS A:154 , ASN A:158 , HIS A:162 , PHE A:163 , TYR A:246 , LEU A:249 , GLY A:250 , PHE A:251 , LEU A:257 , MET A:260 , PHE A:261 , TYR A:264 , NAP A:1299
BINDING SITE FOR RESIDUE NFL A1300
3
AC3
SOFTWARE
LYS A:5 , TYR A:73 , HIS A:107 , LEU A:120 , ARG A:151 , PHE A:263 , LEU A:266 , ASP A:269 , PO4 A:1303 , HOH A:2266 , HOH A:2267
BINDING SITE FOR RESIDUE NFL A1301
4
AC4
SOFTWARE
LYS A:5 , TYR A:73 , LEU A:120 , THR A:121 , ARG A:124 , LEU A:201 , NFL A:1301 , HOH A:2268
BINDING SITE FOR RESIDUE PO4 A1303
5
AC5
SOFTWARE
ARG A:218 , ARG A:270 , ASP A:271 , ILE A:272 , GLU A:273 , HOH A:2269
BINDING SITE FOR RESIDUE GOL A1304
6
AC6
SOFTWARE
ALA A:72
BINDING SITE FOR RESIDUE CL A1305
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_030689 (T23I, chain A, )
2: VAR_030690 (P252L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_030689
T
23
I
NMRL1_HUMAN
Polymorphism
11557236
A
T
23
I
2
UniProt
VAR_030690
P
252
L
NMRL1_HUMAN
Polymorphism
3747582
A
P
252
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.2 (A:3-14)
Exon 1.3 (A:14-93)
Exon 1.4 (A:94-177)
Exon 1.5 (A:177-240)
Exon 1.6b (A:241-298)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000283429
1a
ENSE00001526041
chr16:
4524896-4524555
342
NMRL1_HUMAN
-
0
0
-
-
1.2
ENST00000283429
2
ENSE00001293533
chr16:
4524167-4524094
74
NMRL1_HUMAN
1-14
14
1
A:3-14
12
1.3
ENST00000283429
3
ENSE00001010612
chr16:
4519466-4519228
239
NMRL1_HUMAN
14-93
80
1
A:14-93
80
1.4
ENST00000283429
4
ENSE00001010610
chr16:
4516403-4516154
250
NMRL1_HUMAN
94-177
84
1
A:94-177
84
1.5
ENST00000283429
5
ENSE00001010609
chr16:
4513851-4513661
191
NMRL1_HUMAN
177-240
64
1
A:177-240
64
1.6b
ENST00000283429
6b
ENSE00001900515
chr16:
4511960-4511695
266
NMRL1_HUMAN
241-299
59
1
A:241-298
58
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_NmrA_2wm3A01 (A:7-240)
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Clans
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(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
NmrA
(22)
Homo sapiens (Human)
(2)
1a
NmrA-2wm3A01
A:7-240
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Chain A
Asymmetric Unit 1
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