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(1)
Title
:
THE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI L-ASPARAGINASE AT 1.4 A RESOLUTION
Authors
:
P. Dhavala, A. C. Papageorgiou
Date
:
25 Jun 09 (Deposition) - 24 Nov 09 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Hydrolase
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Dhavala, A. C. Papageorgiou
Structure Of Helicobacter Pylori L-Asparaginase At 1. 4 A Resolution
Acta Crystallogr. , Sect. D V. 65 1253 2009
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Hetero Components
(1, 1)
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1a: ASPARTIC ACID (ASPa)
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No.
Name
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Type
Full Name
1
ASP
1
Mod. Amino Acid
ASPARTIC ACID
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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No.
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1
AC1
SOFTWARE
GLY A:15 , THR A:16 , SER A:31 , GLY A:61 , SER A:62 , GLN A:63 , GLY A:94 , THR A:95 , ASP A:96 , ALA A:120 , ASN A:255 , GLU A:289 , HOH A:2107 , HOH A:2137
BINDING SITE FOR RESIDUE ASP A1333
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(3, 3)
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1: ASN_GLN_ASE_3 (A:6-332)
2: ASN_GLN_ASE_1 (A:10-18)
3: ASN_GLN_ASE_2 (A:88-98)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASN_GLN_ASE_3
PS51732
Asparaginase / glutaminase domain profile.
ASPG_HELPJ
6-332
1
A:6-332
2
ASN_GLN_ASE_1
PS00144
Asparaginase / glutaminase active site signature 1.
ASPG_HELPJ
10-18
1
A:10-18
3
ASN_GLN_ASE_2
PS00917
Asparaginase / glutaminase active site signature 2.
ASPG_HELPJ
88-98
1
A:88-98
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d2wlta_ (A:)
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Class
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Alpha and beta proteins (a/b)
(23833)
Fold
:
Glutaminase/Asparaginase
(37)
Superfamily
:
Glutaminase/Asparaginase
(37)
Family
:
automated matches
(4)
Protein domain
:
automated matches
(4)
Helicobacter pylori [TaxId: 210]
(2)
1a
d2wlta_
A:
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CATH Domains
(2, 2)
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all CATH domains
1a: CATH_2wltA01 (A:5-219)
2a: CATH_2wltA02 (A:220-331)
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Class
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Alpha Beta
(26913)
Architecture
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3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1170, no name defined]
(27)
Helicobacter pylori. Organism_taxid: 210.
(2)
1a
2wltA01
A:5-219
Homologous Superfamily
:
[code=3.40.50.40, no name defined]
(27)
Helicobacter pylori. Organism_taxid: 210.
(2)
2a
2wltA02
A:220-331
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Asparaginase_2wltA01 (A:7-326)
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Clan
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no clan defined [family: Asparaginase]
(13)
Family
:
Asparaginase
(13)
Helicobacter pylori J99 (Campylobacter pylori J99)
(2)
1a
Asparaginase-2wltA01
A:7-326
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