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2WL5
Asym. Unit
Info
Asym.Unit (501 KB)
Biol.Unit 1 (492 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. COMPLEX OF THE H348N MUTANT WITH COENZYME A.
Authors
:
G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
Date
:
22 Jun 09 (Deposition) - 03 Nov 09 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Acyltransferase, Cytoplasm, Phb Biosynthesis, Thiolase Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
The Thiolase Reaction Mechanism: The Importance Of Asn316 And His348 For Stabilizing The Enolate Intermediate Of The Claisen Condensation.
Biochemistry V. 48 11011 2009
[
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Hetero Components
(6, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
3a: S-HYDROXYCYSTEINE (CSOa)
3b: S-HYDROXYCYSTEINE (CSOb)
4a: D-MANNOSE (DNOa)
4b: D-MANNOSE (DNOb)
4c: D-MANNOSE (DNOc)
4d: D-MANNOSE (DNOd)
5a: SODIUM ION (NAa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
COA
2
Ligand/Ion
COENZYME A
3
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
4
DNO
4
Ligand/Ion
D-MANNOSE
5
NA
1
Ligand/Ion
SODIUM ION
6
SO4
14
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:302 , HOH A:2360 , HOH A:2361 , HOH A:2436
BINDING SITE FOR RESIDUE SO4 A1394
02
AC2
SOFTWARE
GLY D:106 , HOH D:2127 , HOH D:2128
BINDING SITE FOR RESIDUE SO4 D1393
03
AC3
SOFTWARE
SER B:260 , ALA B:262 , ARG B:266 , HOH B:2450
BINDING SITE FOR RESIDUE SO4 B1394
04
AC4
SOFTWARE
SER A:260 , ALA A:262 , ARG A:266 , HOH A:2437 , HOH A:2438 , HOH A:2439 , HOH A:2440
BINDING SITE FOR RESIDUE SO4 A1395
05
AC5
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:2451 , HOH B:2452 , HOH B:2453 , HOH B:2456
BINDING SITE FOR RESIDUE SO4 B1395
06
AC6
SOFTWARE
ALA C:303 , GLY C:304 , LYS C:306 , DNO C:1399
BINDING SITE FOR RESIDUE SO4 C1393
07
AC7
SOFTWARE
GLN B:167 , TRP B:168 , HOH B:2457 , HOH B:2459
BINDING SITE FOR RESIDUE SO4 B1396
08
AC8
SOFTWARE
VAL C:281 , GLY C:282 , VAL C:283 , PRO C:294 , HOH C:2160 , HOH C:2161
BINDING SITE FOR RESIDUE SO4 C1394
09
AC9
SOFTWARE
LYS A:196 , HOH A:2441
BINDING SITE FOR RESIDUE SO4 A1396
10
BC1
SOFTWARE
ARG A:41 , ALA A:42 , GLY A:43 , HOH A:2443
BINDING SITE FOR RESIDUE SO4 A1397
11
BC2
SOFTWARE
SER C:4 , ALA C:104 , HOH C:2052
BINDING SITE FOR RESIDUE SO4 C1395
12
BC3
SOFTWARE
SER C:265 , HOH C:2164 , HOH C:2165
BINDING SITE FOR RESIDUE SO4 C1396
13
BC4
SOFTWARE
HOH B:2462 , HOH B:2463 , HOH B:2465 , HOH B:2466 , HOH B:2467 , HOH B:2468 , HOH B:2469
BINDING SITE FOR RESIDUE SO4 B1397
14
BC5
SOFTWARE
HIS B:156 , HOH B:2209 , GLY C:135 , ASP C:136 , HOH C:2167 , HOH C:2168 , HOH C:2169 , HOH C:2170 , HOH C:2171
BINDING SITE FOR RESIDUE DNO C1397
15
BC6
SOFTWARE
THR A:224 , ASP A:226 , SER A:227 , HOH A:2445 , HOH A:2447 , HOH A:2448
BINDING SITE FOR RESIDUE DNO A1398
16
BC7
SOFTWARE
MET C:72 , GLY C:75 , VAL C:76 , PRO C:77 , GLN C:78 , HOH D:2054
BINDING SITE FOR RESIDUE DNO C1398
17
BC8
SOFTWARE
GLU C:301 , ARG C:302 , ALA C:303 , GLY C:304 , SO4 C:1393
BINDING SITE FOR RESIDUE DNO C1399
18
BC9
SOFTWARE
ILE B:53 , TRP B:83 , MET B:85 , ALA B:95 , LEU B:98
BINDING SITE FOR RESIDUE NA B1398
19
CC1
SOFTWARE
CSO A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , MET A:228 , ALA A:243 , GLY A:244 , SER A:247 , MET A:288 , PHE A:319 , ASN A:348 , HOH A:2198 , HOH A:2298 , HOH A:2322 , HOH A:2413 , HOH A:2449 , HOH A:2450 , HOH A:2451 , HOH A:2452 , HOH A:2453 , LYS C:208 , MET D:134
BINDING SITE FOR RESIDUE COA A1399
20
CC2
SOFTWARE
CSO B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , ALA B:243 , GLY B:244 , SER B:247 , MET B:288 , PHE B:319 , ASN B:348 , HOH B:2303 , HOH B:2338 , HOH B:2423 , HOH B:2470 , HOH B:2471 , HOH B:2472 , HOH B:2473 , HOH B:2474 , HOH B:2475 , HOH B:2477 , HOH B:2478 , HOH B:2479 , MET C:134
BINDING SITE FOR RESIDUE COA B1399
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2wl5a2 (A:269-392)
1b: SCOP_d2wl5b2 (B:269-392)
1c: SCOP_d2wl5c2 (C:269-392)
1d: SCOP_d2wl5d2 (D:269-392)
2a: SCOP_d2wl5a1 (A:4-268)
2b: SCOP_d2wl5b1 (B:4-268)
2c: SCOP_d2wl5c1 (C:4-268)
2d: SCOP_d2wl5d1 (D:4-268)
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Classes
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(
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Folds
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(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Zoogloea ramigera [TaxId: 350]
(6)
1a
d2wl5a2
A:269-392
1b
d2wl5b2
B:269-392
1c
d2wl5c2
C:269-392
1d
d2wl5d2
D:269-392
Family
:
Thiolase-related
(67)
Protein domain
:
automated matches
(12)
Zoogloea ramigera [TaxId: 350]
(6)
2a
d2wl5a1
A:4-268
2b
d2wl5b1
B:4-268
2c
d2wl5c1
C:4-268
2d
d2wl5d1
D:4-268
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2wl5A01 (A:4-124,A:194-275)
1b: CATH_2wl5A02 (A:152-193,A:276-389)
1c: CATH_2wl5B02 (B:152-193,B:276-389)
1d: CATH_2wl5C02 (C:152-193,C:276-389)
1e: CATH_2wl5D02 (D:152-193,D:276-389)
1f: CATH_2wl5B01 (B:4-124,B:194-275)
1g: CATH_2wl5C01 (C:4-124,C:194-275)
1h: CATH_2wl5D01 (D:4-124,D:194-275)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(19)
1a
2wl5A01
A:4-124,A:194-275
1b
2wl5A02
A:152-193,A:276-389
1c
2wl5B02
B:152-193,B:276-389
1d
2wl5C02
C:152-193,C:276-389
1e
2wl5D02
D:152-193,D:276-389
1f
2wl5B01
B:4-124,B:194-275
1g
2wl5C01
C:4-124,C:194-275
1h
2wl5D01
D:4-124,D:194-275
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (501 KB)
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