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2WL3
Biol. Unit 1
Info
Asym.Unit (381 KB)
Biol.Unit 1 (728 KB)
Biol.Unit 2 (749 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CATECHOL 2,3-DIOXYGENASE
Authors
:
H. J. Cho, K. J. Kim, B. S. Kang
Date
:
21 Jun 09 (Deposition) - 01 Sep 10 (Release) - 10 Nov 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (4x)
Biol. Unit 2: A,B (4x)
Keywords
:
Aromatic Hydrocarbons Catabolism, Akbc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Cho, K. Kim, S. Y. Sohn, H. Y. Cho, K. J. Kim, M. H. Kim, D. Kim, E. Kim, B. S. Kang
Substrate-Binding Mechanism Of A Type I Extradiol Dioxygenase.
J. Biol. Chem. V. 285 34643 2010
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Hetero Components
(2, 64)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
FE
-1
Ligand/Ion
FE (III) ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
MSE
56
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(5, 5)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
PRO A:111 , ASP A:155 , HOH A:2048 , HOH C:2016 , HOH C:2017
BINDING SITE FOR RESIDUE CA A1290
2
AC7
SOFTWARE
HIS C:149 , HIS C:212 , TYR C:253 , GLU C:263 , HOH C:2048
BINDING SITE FOR RESIDUE FE C1286
3
AC8
SOFTWARE
LYS C:176 , VAL C:184
BINDING SITE FOR RESIDUE GOL C1287
4
AC9
SOFTWARE
HIS D:149 , HIS D:212 , TYR D:253 , GLU D:263
BINDING SITE FOR RESIDUE FE D1287
5
BC1
SOFTWARE
ASP D:94 , VAL D:102 , LYS D:176
BINDING SITE FOR RESIDUE GOL D1288
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2wl3a1 (A:2-134)
1b: SCOP_d2wl3b1 (B:1-134)
1c: SCOP_d2wl3b2 (B:135-287)
1d: SCOP_d2wl3c1 (C:2-134)
1e: SCOP_d2wl3c2 (C:135-285)
1f: SCOP_d2wl3d1 (D:2-134)
1g: SCOP_d2wl3d2 (D:135-286)
1h: SCOP_d2wl3a2 (A:135-288)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
automated matches
(34)
Protein domain
:
automated matches
(34)
Rhodococcus sp. [TaxId: 186196]
(2)
1a
d2wl3a1
A:2-134
1b
d2wl3b1
B:1-134
1c
d2wl3b2
B:135-287
1d
d2wl3c1
C:2-134
1e
d2wl3c2
C:135-285
1f
d2wl3d1
D:2-134
1g
d2wl3d2
D:135-286
1h
d2wl3a2
A:135-288
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CATH Domains
(0, 0)
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyoxalase_2wl3D01 (D:146-263)
1b: PFAM_Glyoxalase_2wl3D02 (D:146-263)
1c: PFAM_Glyoxalase_2wl3D03 (D:146-263)
1d: PFAM_Glyoxalase_2wl3D04 (D:146-263)
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Clan
:
Glyoxalase
(58)
Family
:
Glyoxalase
(34)
Rhodococcus sp. DK17
(2)
1a
Glyoxalase-2wl3D01
D:146-263
1b
Glyoxalase-2wl3D02
D:146-263
1c
Glyoxalase-2wl3D03
D:146-263
1d
Glyoxalase-2wl3D04
D:146-263
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Asym.Unit (381 KB)
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