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2WKU
Asym. Unit
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Asym.Unit (481 KB)
Biol.Unit 1 (474 KB)
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(1)
Title
:
BIOSYNTHETIC THIOLASE FROM Z. RAMIGERA. THE N316H MUTANT.
Authors
:
G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
Date
:
18 Jun 09 (Deposition) - 03 Nov 09 (Release) - 02 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Acyltransferase, Phb Biosynthesis, Cytoplasm, Transferase, Thiolase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Merilainen, V. Poikela, P. Kursula, R. K. Wierenga
The Thiolase Reaction Mechanism: The Importance Of Asn316 And His348 For Stabilizing The Enolate Intermediate Of The Claisen Condensation.
Biochemistry V. 48 11011 2009
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: D-MANNOSE (DNOa)
1b: D-MANNOSE (DNOb)
1c: D-MANNOSE (DNOc)
1d: D-MANNOSE (DNOd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DNO
4
Ligand/Ion
D-MANNOSE
2
SO4
9
Ligand/Ion
SULFATE ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER B:260 , ARG B:266
BINDING SITE FOR RESIDUE SO4 B1393
02
AC2
SOFTWARE
LYS B:298 , ARG B:302
BINDING SITE FOR RESIDUE SO4 B1394
03
AC3
SOFTWARE
ARG A:41 , ILE A:199 , PRO A:201 , DNO A:1396 , HOH A:2186 , HOH A:2187
BINDING SITE FOR RESIDUE SO4 A1393
04
AC4
SOFTWARE
HOH B:2213 , HOH B:2214
BINDING SITE FOR RESIDUE SO4 B1398
05
AC5
SOFTWARE
MET B:72 , LYS B:73 , GLY B:75
BINDING SITE FOR RESIDUE SO4 B1395
06
AC6
SOFTWARE
SER A:260 , ARG A:266
BINDING SITE FOR RESIDUE SO4 A1394
07
AC7
SOFTWARE
ARG C:41 , VAL C:200 , HOH C:2014 , HOH C:2113 , HOH C:2115
BINDING SITE FOR RESIDUE SO4 C1393
08
AC8
SOFTWARE
ARG B:220 , HIS B:221 , HOH B:2211
BINDING SITE FOR RESIDUE SO4 B1396
09
AC9
SOFTWARE
ARG A:220 , HIS A:221 , HOH A:2189
BINDING SITE FOR RESIDUE SO4 A1395
10
BC1
SOFTWARE
ALA A:8 , SER A:9 , ALA A:10 , ARG A:41 , ASP A:197 , LEU A:272 , PHE A:363 , SO4 A:1393 , HOH A:2190 , HOH A:2191 , HOH A:2192
BINDING SITE FOR RESIDUE DNO A1396
11
BC2
SOFTWARE
LYS A:185 , PRO A:334 , SER A:335 , VAL A:337 , VAL A:339 , ARG A:368 , HOH A:2173
BINDING SITE FOR RESIDUE DNO A1397
12
BC3
SOFTWARE
ALA B:8 , SER B:9 , ALA B:10 , ARG B:41 , ASP B:197 , LEU B:272 , PHE B:363 , HOH B:2030
BINDING SITE FOR RESIDUE DNO B1397
13
BC4
SOFTWARE
VAL A:283 , ASP A:284 , THR A:290 , HOH A:2193 , HOH A:2194 , HOH A:2195 , GLN B:78
BINDING SITE FOR RESIDUE DNO A1398
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2wkua2 (A:269-392)
1b: SCOP_d2wkub2 (B:269-392)
1c: SCOP_d2wkuc2 (C:269-392)
1d: SCOP_d2wkud2 (D:269-392)
2a: SCOP_d2wkua1 (A:4-268)
2b: SCOP_d2wkub1 (B:4-268)
2c: SCOP_d2wkuc1 (C:4-268)
2d: SCOP_d2wkud1 (D:4-268)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Zoogloea ramigera [TaxId: 350]
(6)
1a
d2wkua2
A:269-392
1b
d2wkub2
B:269-392
1c
d2wkuc2
C:269-392
1d
d2wkud2
D:269-392
Family
:
Thiolase-related
(67)
Protein domain
:
automated matches
(12)
Zoogloea ramigera [TaxId: 350]
(6)
2a
d2wkua1
A:4-268
2b
d2wkub1
B:4-268
2c
d2wkuc1
C:4-268
2d
d2wkud1
D:4-268
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2wkuA01 (A:4-124,A:194-275)
1b: CATH_2wkuA02 (A:152-193,A:276-389)
1c: CATH_2wkuB02 (B:152-193,B:276-389)
1d: CATH_2wkuC02 (C:152-193,C:276-389)
1e: CATH_2wkuD02 (D:152-193,D:276-389)
1f: CATH_2wkuB01 (B:4-124,B:194-275)
1g: CATH_2wkuC01 (C:4-124,C:194-275)
1h: CATH_2wkuD01 (D:4-124,D:194-275)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(19)
1a
2wkuA01
A:4-124,A:194-275
1b
2wkuA02
A:152-193,A:276-389
1c
2wkuB02
B:152-193,B:276-389
1d
2wkuC02
C:152-193,C:276-389
1e
2wkuD02
D:152-193,D:276-389
1f
2wkuB01
B:4-124,B:194-275
1g
2wkuC01
C:4-124,C:194-275
1h
2wkuD01
D:4-124,D:194-275
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Thiolase_C_2wkuD01 (D:269-391)
1b: PFAM_Thiolase_C_2wkuD02 (D:269-391)
1c: PFAM_Thiolase_C_2wkuD03 (D:269-391)
1d: PFAM_Thiolase_C_2wkuD04 (D:269-391)
2a: PFAM_Thiolase_N_2wkuD05 (D:11-262)
2b: PFAM_Thiolase_N_2wkuD06 (D:11-262)
2c: PFAM_Thiolase_N_2wkuD07 (D:11-262)
2d: PFAM_Thiolase_N_2wkuD08 (D:11-262)
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Clans
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Families
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Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Thiolase_C
(23)
Zoogloea ramigera
(15)
1a
Thiolase_C-2wkuD01
D:269-391
1b
Thiolase_C-2wkuD02
D:269-391
1c
Thiolase_C-2wkuD03
D:269-391
1d
Thiolase_C-2wkuD04
D:269-391
Family
:
Thiolase_N
(23)
Zoogloea ramigera
(15)
2a
Thiolase_N-2wkuD05
D:11-262
2b
Thiolase_N-2wkuD06
D:11-262
2c
Thiolase_N-2wkuD07
D:11-262
2d
Thiolase_N-2wkuD08
D:11-262
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