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Getting 'Biological Unit' information from database.
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2WKQ
Biol. Unit 1
Info
Asym.Unit (70 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING THE LOV2 C450A MUTANT
Authors
:
Y. I. Wu, D. Frey, O. I. Lungu, A. Jaehrig, I. Schlichting, B. Kuhlman, K.
Date
:
16 Jun 09 (Deposition) - 18 Aug 09 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Cell Adhesion, Nucleotide-Binding, Protein Engineering, Ras Superfamily Lov2, Phototropin1, Protein Design, Small G-Protein, Light- Induced Signal Transduction, Lov2, Gtpase, Rho Family, Atp- Binding, Chimera, Nucleotide-Binding Protein Engineering, Light- Induced Signal Transduction, Alternative Splicing, Cell Membrane, Adp-Ribosylation, Lipoprotein, Gtp-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. I. Wu, D. Frey, O. I. Lungu, A. Jaehrig, I. Schlichting, B. Kuhlman, K. M. Hahn
A Genetically Encoded Photoactivatable Rac Controls The Motility Of Living Cells.
Nature V. 461 104 2009
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
4a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
5a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
5
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:555 , ALA A:556 , VAL A:557 , GLY A:558 , LYS A:559 , THR A:560 , CYS A:561 , PHE A:571 , TYR A:575 , PRO A:577 , THR A:578 , GLY A:603 , LYS A:659 , ASP A:661 , LEU A:662 , SER A:701 , ALA A:702 , LEU A:703 , MG A:1724 , HOH A:2164 , HOH A:2225 , HOH A:2388 , HOH A:2389 , HOH A:2390 , HOH A:2391 , HOH A:2392
BINDING SITE FOR RESIDUE GTP A 1722
2
AC2
SOFTWARE
VAL A:416 , THR A:418 , ASN A:425 , ASN A:449 , ALA A:450 , ARG A:451 , LEU A:453 , GLN A:454 , VAL A:463 , ARG A:464 , ILE A:466 , ARG A:467 , ILE A:470 , LEU A:480 , ASN A:482 , ASN A:492 , PHE A:494 , LEU A:496 , PHE A:509 , ILE A:510 , GLY A:511 , GLN A:513 , CL A:1726 , HOH A:2020 , HOH A:2050 , HOH A:2393 , HOH A:2394 , HOH A:2395 , HOH A:2396
BINDING SITE FOR RESIDUE FMN A 1723
3
AC3
SOFTWARE
THR A:560 , THR A:578 , GTP A:1722 , HOH A:2225 , HOH A:2391
BINDING SITE FOR RESIDUE MG A 1724
4
AC4
SOFTWARE
SER A:626 , LYS A:659 , HOH A:2258
BINDING SITE FOR RESIDUE CL A 1725
5
AC5
SOFTWARE
ASN A:425 , ASN A:449 , ARG A:467 , ILE A:470 , FMN A:1723
BINDING SITE FOR RESIDUE CL A 1726
6
AC6
SOFTWARE
THR A:704 , ARG A:706 , HOH A:2280
BINDING SITE FOR RESIDUE CL A 1727
7
AC7
SOFTWARE
GLY A:516 , THR A:517 , GLU A:699 , HOH A:2107 , HOH A:2365 , HOH A:2397
BINDING SITE FOR RESIDUE EDO A 1728
8
AC8
SOFTWARE
THR A:477 , GLN A:479 , LEU A:493 , GLU A:525 , HOH A:2120
BINDING SITE FOR RESIDUE EDO A 1729
[
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]
SAPs(SNPs)/Variants
(10, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_014540 (N569D, chain A, )
02: VAR_014541 (F571L, chain A, )
03: VAR_014542 (A602T, chain A, )
04: VAR_014543 (D606G, chain A, )
05: VAR_014545 (V636G, chain A, )
06: VAR_014544 (V636I, chain A, )
07: VAR_014546 (T651I, chain A, )
08: VAR_014547 (K673R, chain A, )
09: VAR_014548 (K676E, chain A, )
10: VAR_033303 (T678I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_014540
N
26
D
RAC1_HUMAN
Polymorphism
5830
A
N
569
D
02
UniProt
VAR_014541
F
28
L
RAC1_HUMAN
Polymorphism
5832
A
F
571
L
03
UniProt
VAR_014542
A
59
T
RAC1_HUMAN
Polymorphism
5837
A
A
602
T
04
UniProt
VAR_014543
D
63
G
RAC1_HUMAN
Polymorphism
5831
A
D
606
G
05
UniProt
VAR_014545
V
93
G
RAC1_HUMAN
Polymorphism
5826
A
V
636
G
06
UniProt
VAR_014544
V
93
I
RAC1_HUMAN
Polymorphism
5825
A
V
636
I
07
UniProt
VAR_014546
T
108
I
RAC1_HUMAN
Polymorphism
5838
A
T
651
I
08
UniProt
VAR_014547
K
130
R
RAC1_HUMAN
Polymorphism
5828
A
K
673
R
09
UniProt
VAR_014548
K
133
E
RAC1_HUMAN
Polymorphism
5835
A
K
676
E
10
UniProt
VAR_033303
T
135
I
RAC1_HUMAN
Polymorphism
11540455
A
T
678
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RHO (A:547-719)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC1_HUMAN
1-176
1
A:547-719
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wkqA02 (A:546-721)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Oat, human (Avena sativa, homo sapiens)
(3)
1a
2wkqA02
A:546-721
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ras_2wkqA01 (A:548-721)
2a: PFAM_PAS_9_2wkqA02 (A:413-518)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2wkqA01
A:548-721
Clan
:
PAS_Fold
(84)
Family
:
PAS_9
(29)
Avena sativa (Oat)
(7)
2a
PAS_9-2wkqA02
A:413-518
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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