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2WKH
Biol. Unit 1
Info
Asym.Unit (180 KB)
Biol.Unit 1 (171 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ACYL-ENZYME OXA-10 K70C-AMPICILLIN AT PH 7
Authors
:
L. Vercheval, C. Bauvois, F. Kerff, E. Sauvage, R. Guiet, P. Charlier, M
Date
:
11 Jun 09 (Deposition) - 25 Aug 10 (Release) - 01 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Antibiotic Resistance, Class D Beta-Lactamase, Plasmid Encoded
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Vercheval, C. Bauvois, A. Di Paolo, F. Borel, J. Ferrer, E. Sauvage A. Matagne, J. Frere, P. Charlier, M. Galleni, F. Kerff
Three Factors That Modulate The Activity Of Class D Beta- Lactamases And Interfere With The Post-Translational Carboxylation Of Lys70.
Biochem. J. V. 432 495 2010
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
2a: (2R,4S)-2-[(R)-{[(2R)-2-AMINO-2-PH... (ZZ7a)
2b: (2R,4S)-2-[(R)-{[(2R)-2-AMINO-2-PH... (ZZ7b)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
2
ZZ7
2
Ligand/Ion
(2R,4S)-2-[(R)-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}(CARBOXY)METHYL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:66 , SER A:67 , MET A:99 , TRP A:102 , SER A:115 , VAL A:117 , GLU A:129 , LEU A:155 , THR A:206 , GLY A:207 , PHE A:208 , SER A:209 , LEU A:247 , ARG A:250 , HOH A:2125 , HOH A:2136 , HOH A:2148
BINDING SITE FOR RESIDUE ZZ7 A1265
2
AC2
SOFTWARE
ARG A:160 , HOH A:2150 , HOH A:2151
BINDING SITE FOR RESIDUE SO4 A1266
3
AC3
SOFTWARE
MET A:99 , LYS A:100 , SER A:147 , GLY A:148 , HOH A:2152 , HOH A:2153
BINDING SITE FOR RESIDUE SO4 A1267
4
AC4
SOFTWARE
SER A:67 , SER A:115 , LYS A:205 , THR A:206 , GLY A:207 , PHE A:208 , ARG A:250
BINDING SITE FOR RESIDUE SO4 A1268
5
AC5
SOFTWARE
ALA B:66 , SER B:67 , MET B:99 , SER B:115 , VAL B:117 , GLY B:207 , PHE B:208 , SER B:209 , GLY B:210 , ARG B:250
BINDING SITE FOR RESIDUE ZZ7 B1265
6
AC6
SOFTWARE
THR B:80 , ARG B:131 , LYS B:134 , TYR B:135
BINDING SITE FOR RESIDUE SO4 B1266
7
AC7
SOFTWARE
SER B:67 , SER B:115 , LYS B:205 , THR B:206 , GLY B:207 , PHE B:208 , ARG B:250
BINDING SITE FOR RESIDUE SO4 B1267
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_D (A:65-75,B:65-75)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_D
PS00337
Beta-lactamase class-D active site.
BLO10_PSEAI
65-75
2
A:65-75
B:65-75
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2wkha_ (A:)
1b: SCOP_d2wkhb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
Class D beta-lactamase
(32)
Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
(25)
1a
d2wkha_
A:
1b
d2wkhb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wkhB00 (B:19-264)
1b: CATH_2wkhA00 (A:21-264)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Pseudomonas aeruginosa. Organism_taxid: 287.
(17)
1a
2wkhB00
B:19-264
1b
2wkhA00
A:21-264
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (180 KB)
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