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Getting 'Exon' information from database.
2WK3
Asym. Unit
Info
Asym.Unit (330 KB)
Biol.Unit 1 (162 KB)
Biol.Unit 2 (163 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN INSULIN-DEGRADING ENZYME IN COMPLEX WITH AMYLOID-BETA (1-42)
Authors
:
Q. Guo, W. J. Tang
Date
:
05 Jun 09 (Deposition) - 03 Nov 09 (Release) - 09 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Polymorphism, Metal-Binding, Metalloprotease, Ide, Zinc, Protease, Hydrolase, Cytoplasm, Amyloid-Beta (1-42)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Guo, M. Manolopoulou, Y. Bian, A. B. Schilling, W. J. Tang
Molecular Basis For The Recognition And Cleavages Of Igf-Ii, Tgf-Alpha, And Amylin By Human Insulin Degrading Enzyme.
J. Mol. Biol. V. 395 430 2010
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:108 , HIS B:112 , GLU B:189 , PHE D:19 , PHE D:20
BINDING SITE FOR RESIDUE ZN B3013
2
AC2
SOFTWARE
HIS A:108 , HIS A:112 , GLU A:189 , PHE C:19 , PHE C:20
BINDING SITE FOR RESIDUE ZN A3013
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_000016 (A21G, chain C/D, )
2: VAR_014215 (E22G, chain C/D, )
3: VAR_014216 (E22K, chain C/D, )
4: VAR_000017 (E22Q, chain C/D, )
5: VAR_051571 (E612K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_000016
A
692
G
A4_HUMAN
Disease (AD1)
---
C/D
A
21
G
2
UniProt
VAR_014215
E
693
G
A4_HUMAN
Disease (AD1)
---
C/D
E
22
G
3
UniProt
VAR_014216
E
693
K
A4_HUMAN
Disease (CAA-APP)
---
C/D
E
22
K
4
UniProt
VAR_000017
E
693
Q
A4_HUMAN
Disease (CAA-APP)
---
C/D
E
22
Q
5
UniProt
VAR_051571
E
612
K
IDE_HUMAN
Polymorphism
2229708
A/B
E
612
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (A:95-118,B:95-118)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
IDE_HUMAN
95-118
2
A:95-118
B:95-118
[
close PROSITE info
]
Exons
(26, 52)
Info
All Exons
Exon 1.7 (A:43-95 | B:44-95)
Exon 1.8 (A:95-164 | B:95-164)
Exon 1.9 (A:164-221 | B:164-221)
Exon 1.10 (A:221-262 | B:221-262)
Exon 1.11b (A:262-299 | B:262-299)
Exon 1.12 (A:300-354 | B:300-354)
Exon 1.13 (A:354-385 | B:354-385)
Exon 1.14 (A:385-415 | B:385-415)
Exon 1.15 (A:416-442 | B:416-442)
Exon 1.16 (A:443-477 | B:443-477)
Exon 1.18 (A:477-511 | B:477-511)
Exon 1.19 (A:512-552 | B:512-552)
Exon 1.20 (A:553-580 | B:553-580)
Exon 1.22c (A:580-628 | B:580-628)
Exon 1.24c (A:629-665 | B:629-665)
Exon 1.25a (A:666-706 | B:666-706)
Exon 1.26 (A:706-736 | B:706-736)
Exon 1.27 (A:737-774 | B:737-774)
Exon 1.28 (A:774-830 | B:774-830)
Exon 1.29 (A:830-921 | B:830-921)
Exon 1.30 (A:921-941 | B:921-941)
Exon 1.31 (A:942-966 | B:942-965)
Exon 1.32 (A:966-988 (gaps) | B:979-988)
Exon 1.33b (A:989-1012 | B:989-1012)
Exon 2.21b (C:1-17 (gaps) | D:1-17 (gaps))
Exon 2.22a (C:18-22 | D:18-22)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.7
02: Boundary 1.7/1.8
03: Boundary 1.8/1.9
04: Boundary 1.9/1.10
05: Boundary 1.10/1.11b
06: Boundary 1.11b/1.12
07: Boundary 1.12/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16
11: Boundary 1.16/1.18
12: Boundary 1.18/1.19
13: Boundary 1.19/1.20
14: Boundary 1.20/1.22c
15: Boundary 1.22c/1.24c
16: Boundary 1.24c/1.25a
17: Boundary 1.25a/1.26
18: Boundary 1.26/1.27
19: Boundary 1.27/1.28
20: Boundary 1.28/1.29
21: Boundary 1.29/1.30
22: Boundary 1.30/1.31
23: Boundary 1.31/1.32
24: Boundary 1.32/1.33b
25: Boundary 1.33b/-
26: Boundary 2.20/2.21b
27: Boundary 2.21b/2.22a
28: Boundary 2.22a/2.23f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265986
1a
ENSE00000810721
chr10:
94333833-94333679
155
IDE_HUMAN
1-33
33
0
-
-
1.7
ENST00000265986
7
ENSE00001007241
chr10:
94297307-94297123
185
IDE_HUMAN
33-95
63
2
A:43-95
B:44-95
53
52
1.8
ENST00000265986
8
ENSE00000810719
chr10:
94294542-94294335
208
IDE_HUMAN
95-164
70
2
A:95-164
B:95-164
70
70
1.9
ENST00000265986
9
ENSE00000810718
chr10:
94291674-94291505
170
IDE_HUMAN
164-221
58
2
A:164-221
B:164-221
58
58
1.10
ENST00000265986
10
ENSE00000810717
chr10:
94274799-94274677
123
IDE_HUMAN
221-262
42
2
A:221-262
B:221-262
42
42
1.11b
ENST00000265986
11b
ENSE00002200011
chr10:
94269919-94269807
113
IDE_HUMAN
262-299
38
2
A:262-299
B:262-299
38
38
1.12
ENST00000265986
12
ENSE00001792299
chr10:
94268647-94268485
163
IDE_HUMAN
300-354
55
2
A:300-354
B:300-354
55
55
1.13
ENST00000265986
13
ENSE00001679493
chr10:
94267962-94267870
93
IDE_HUMAN
354-385
32
2
A:354-385
B:354-385
32
32
1.14
ENST00000265986
14
ENSE00001644321
chr10:
94267423-94267332
92
IDE_HUMAN
385-415
31
2
A:385-415
B:385-415
31
31
1.15
ENST00000265986
15
ENSE00001604816
chr10:
94266279-94266199
81
IDE_HUMAN
416-442
27
2
A:416-442
B:416-442
27
27
1.16
ENST00000265986
16
ENSE00001667495
chr10:
94264654-94264551
104
IDE_HUMAN
443-477
35
2
A:443-477
B:443-477
35
35
1.18
ENST00000265986
18
ENSE00001648528
chr10:
94250352-94250250
103
IDE_HUMAN
477-511
35
2
A:477-511
B:477-511
35
35
1.19
ENST00000265986
19
ENSE00001617455
chr10:
94247075-94246953
123
IDE_HUMAN
512-552
41
2
A:512-552
B:512-552
41
41
1.20
ENST00000265986
20
ENSE00001749482
chr10:
94243094-94243012
83
IDE_HUMAN
553-580
28
2
A:553-580
B:553-580
28
28
1.22c
ENST00000265986
22c
ENSE00001616294
chr10:
94239178-94239034
145
IDE_HUMAN
580-628
49
2
A:580-628
B:580-628
49
49
1.24c
ENST00000265986
24c
ENSE00001756569
chr10:
94235751-94235641
111
IDE_HUMAN
629-665
37
2
A:629-665
B:629-665
37
37
1.25a
ENST00000265986
25a
ENSE00001597974
chr10:
94234718-94234598
121
IDE_HUMAN
666-706
41
2
A:666-706
B:666-706
41
41
1.26
ENST00000265986
26
ENSE00001744468
chr10:
94230102-94230011
92
IDE_HUMAN
706-736
31
2
A:706-736
B:706-736
31
31
1.27
ENST00000265986
27
ENSE00001745441
chr10:
94228747-94228636
112
IDE_HUMAN
737-774
38
2
A:737-774
B:737-774
38
38
1.28
ENST00000265986
28
ENSE00001711231
chr10:
94225600-94225433
168
IDE_HUMAN
774-830
57
2
A:774-830
B:774-830
57
57
1.29
ENST00000265986
29
ENSE00001669881
chr10:
94223760-94223488
273
IDE_HUMAN
830-921
92
2
A:830-921
B:830-921
92
92
1.30
ENST00000265986
30
ENSE00001634298
chr10:
94221009-94220948
62
IDE_HUMAN
921-941
21
2
A:921-941
B:921-941
21
21
1.31
ENST00000265986
31
ENSE00001762309
chr10:
94216188-94216116
73
IDE_HUMAN
942-966
25
2
A:942-966
B:942-965
25
24
1.32
ENST00000265986
32
ENSE00001734076
chr10:
94215400-94215333
68
IDE_HUMAN
966-988
23
2
A:966-988 (gaps)
B:979-988
23
10
1.33b
ENST00000265986
33b
ENSE00001893153
chr10:
94214296-94211441
2856
IDE_HUMAN
989-1019
31
2
A:989-1012
B:989-1012
24
24
2.2f
ENST00000346798
2f
ENSE00001909719
chr21:
27542972-27542882
91
A4_HUMAN
1-19
19
0
-
-
2.5b
ENST00000346798
5b
ENSE00001612324
chr21:
27484463-27484296
168
A4_HUMAN
20-75
56
0
-
-
2.6b
ENST00000346798
6b
ENSE00001017345
chr21:
27462388-27462259
130
A4_HUMAN
76-119
44
0
-
-
2.7b
ENST00000346798
7b
ENSE00001726854
chr21:
27425664-27425552
113
A4_HUMAN
119-156
38
0
-
-
2.8a
ENST00000346798
8a
ENSE00001017348
chr21:
27423509-27423316
194
A4_HUMAN
157-221
65
0
-
-
2.9b
ENST00000346798
9b
ENSE00001303241
chr21:
27394358-27394156
203
A4_HUMAN
221-289
69
0
-
-
2.11
ENST00000346798
11
ENSE00001327560
chr21:
27372497-27372330
168
A4_HUMAN
289-345
57
0
-
-
2.12a
ENST00000346798
12a
ENSE00001309322
chr21:
27369731-27369675
57
A4_HUMAN
345-364
20
0
-
-
2.13
ENST00000346798
13
ENSE00001017338
chr21:
27354790-27354657
134
A4_HUMAN
364-408
45
0
-
-
2.14a
ENST00000346798
14a
ENSE00001608815
chr21:
27348341-27348267
75
A4_HUMAN
409-433
25
0
-
-
2.15b
ENST00000346798
15b
ENSE00001017350
chr21:
27347541-27347383
159
A4_HUMAN
434-486
53
0
-
-
2.16
ENST00000346798
16
ENSE00001299537
chr21:
27328069-27327941
129
A4_HUMAN
487-529
43
0
-
-
2.17
ENST00000346798
17
ENSE00001299406
chr21:
27327003-27326904
100
A4_HUMAN
530-563
34
0
-
-
2.19
ENST00000346798
19
ENSE00001299617
chr21:
27284274-27284053
222
A4_HUMAN
563-637
75
0
-
-
2.20
ENST00000346798
20
ENSE00001324614
chr21:
27277389-27277336
54
A4_HUMAN
637-655
19
0
-
-
2.21b
ENST00000346798
21b
ENSE00001318724
chr21:
27269985-27269885
101
A4_HUMAN
655-688
34
2
C:1-17 (gaps)
D:1-17 (gaps)
17
17
2.22a
ENST00000346798
22a
ENSE00001290140
chr21:
27264180-27264034
147
A4_HUMAN
689-737
49
2
C:18-22
D:18-22
5
5
2.23f
ENST00000346798
23f
ENSE00001725664
chr21:
27254082-27252861
1222
A4_HUMAN
738-770
33
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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CATH Domains
(0, 0)
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all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(3, 8)
Info
all PFAM domains
1a: PFAM_Peptidase_M16_2wk3B01 (B:74-212)
1b: PFAM_Peptidase_M16_2wk3B02 (B:74-212)
2a: PFAM_Peptidase_M16_C_2wk3B03 (B:706-889)
2b: PFAM_Peptidase_M16_C_2wk3B04 (B:706-889)
2c: PFAM_Peptidase_M16_C_2wk3B05 (B:706-889)
2d: PFAM_Peptidase_M16_C_2wk3B06 (B:706-889)
3a: PFAM_Beta_APP_2wk3D01 (D:16-22)
3b: PFAM_Beta_APP_2wk3D02 (D:16-22)
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Clan
:
Peptidase_ME
(35)
Family
:
Peptidase_M16
(29)
Homo sapiens (Human)
(8)
1a
Peptidase_M16-2wk3B01
B:74-212
1b
Peptidase_M16-2wk3B02
B:74-212
Family
:
Peptidase_M16_C
(29)
Homo sapiens (Human)
(8)
2a
Peptidase_M16_C-2wk3B03
B:706-889
2b
Peptidase_M16_C-2wk3B04
B:706-889
2c
Peptidase_M16_C-2wk3B05
B:706-889
2d
Peptidase_M16_C-2wk3B06
B:706-889
Clan
:
no clan defined [family: Beta-APP]
(8)
Family
:
Beta-APP
(8)
Homo sapiens (Human)
(7)
3a
Beta-APP-2wk3D01
D:16-22
3b
Beta-APP-2wk3D02
D:16-22
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