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2WJV
Biol. Unit 2
Info
Asym.Unit (274 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN NONSENSE MEDIATED DECAY FACTORS UPF1 AND UPF2
Authors
:
M. Clerici, A. Mourao, I. Gutsche, N. H. Gehring, M. W. Hentze, A. Kulozi J. Kadlec, M. Sattler, S. Cusack
Date
:
01 Jun 09 (Deposition) - 07 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Keywords
:
Hydrolase, Zinc-Finger, Atp-Binding, Rna-Binding, Nonsense-Mediated Mrna Decay, Nucleotide-Binding, Metal-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Clerici, A. Mourao, I. Gutsche, N. H. Gehring, M. W. Hentze, A. Kulozik, J. Kadlec, M. Sattler, S. Cusack
Unusual Bipartite Mode Of Interaction Between The Nonsense-Mediated Decay Factors, Upf1 And Upf2.
Embo J. V. 28 2293 2009
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
10
Ligand/Ion
SULFATE ION
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: BC8 (SOFTWARE)
02: BC9 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
BC8
SOFTWARE
CYS B:123 , CYS B:126 , CYS B:145 , HIS B:155
BINDING SITE FOR RESIDUE ZN B 1
02
BC9
SOFTWARE
CYS B:137 , SER B:140 , HIS B:159 , CYS B:165
BINDING SITE FOR RESIDUE ZN B 2
03
CC1
SOFTWARE
CYS B:183 , CYS B:186 , CYS B:209 , CYS B:213
BINDING SITE FOR RESIDUE ZN B 3
04
CC2
SOFTWARE
ASN B:472 , HIS B:473
BINDING SITE FOR RESIDUE SO4 B 989
05
CC3
SOFTWARE
GLY B:497 , THR B:499 , VAL B:500
BINDING SITE FOR RESIDUE SO4 B 990
06
CC4
SOFTWARE
TYR B:764 , ARG B:843 , HIS B:847 , GLN B:848 , GLY B:849
BINDING SITE FOR RESIDUE SO4 B 991
07
CC5
SOFTWARE
ARG B:767
BINDING SITE FOR RESIDUE SO4 B 992
08
CC6
SOFTWARE
ARG B:832
BINDING SITE FOR RESIDUE SO4 B 993
09
CC7
SOFTWARE
ARG B:462 , PHE B:463 , THR B:464
BINDING SITE FOR RESIDUE SO4 B 995
10
CC8
SOFTWARE
THR B:794 , PRO B:795 , SER B:825 , VAL B:826 , ASP B:827 , GLY B:851 , PHE B:852 , ARG B:858
BINDING SITE FOR RESIDUE SO4 B 996
11
CC9
SOFTWARE
SER B:763 , PRO B:795 , TYR B:796 , GLU B:797 , ILE B:850
BINDING SITE FOR RESIDUE SO4 B 997
12
DC1
SOFTWARE
SER B:523 , ASN B:524 , ILE B:525 , ARG B:549
BINDING SITE FOR RESIDUE SO4 B 998
13
DC2
SOFTWARE
PRO B:494 , GLN B:665 , ARG B:703 , GLY B:831 , ARG B:865
BINDING SITE FOR RESIDUE SO4 B 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
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CATH Domains
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_AAA_11_2wjvB01 (B:470-673)
1b: PFAM_AAA_11_2wjvB02 (B:470-673)
2a: PFAM_AAA_12_2wjvB03 (B:680-877)
2b: PFAM_AAA_12_2wjvB04 (B:680-877)
3a: PFAM_Upf2_2wjvE01 (E:1105-1198)
3b: PFAM_Upf2_2wjvE02 (E:1105-1198)
4a: PFAM_UPF1_Zn_bind_2wjvB05 (B:121-272)
4b: PFAM_UPF1_Zn_bind_2wjvB06 (B:121-272)
View:
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Clans
(
)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
AAA_11
(5)
Homo sapiens (Human)
(4)
1a
AAA_11-2wjvB01
B:470-673
1b
AAA_11-2wjvB02
B:470-673
Family
:
AAA_12
(5)
Homo sapiens (Human)
(4)
2a
AAA_12-2wjvB03
B:680-877
2b
AAA_12-2wjvB04
B:680-877
Clan
:
TPR
(230)
Family
:
Upf2
(1)
Homo sapiens (Human)
(1)
3a
Upf2-2wjvE01
E:1105-1198
3b
Upf2-2wjvE02
E:1105-1198
Clan
:
no clan defined [family: UPF1_Zn_bind]
(3)
Family
:
UPF1_Zn_bind
(3)
Homo sapiens (Human)
(2)
4a
UPF1_Zn_bind-2wjvB05
B:121-272
4b
UPF1_Zn_bind-2wjvB06
B:121-272
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Asymmetric Unit 1
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Asym.Unit (274 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (135 KB)
Header - Biol.Unit 2
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