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2WJ8
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (628 KB)
Biol.Unit 2 (630 KB)
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(1)
Title
:
RESPIRATORY SYNCITIAL VIRUS RIBONUCLEOPROTEIN
Authors
:
R. G. Tawar, S. Duquerroy, C. Vonrhein, P. F. Varela, L. Damier-Piolle, N. Castagne, K. Maclellan, H. Bedouelle, G. Bricogne, D. Bhella, J. Eleouet, F. A. Rey
Date
:
25 May 09 (Deposition) - 08 Dec 09 (Release) - 17 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.29
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t
Biol. Unit 1: K,L,M,N,O,P,Q,R,S,T,k,l,m,n,o,p,q,r,s,t (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,a,b,c,d,e,f,g,h,i,j (1x)
Keywords
:
Rna Binding Protein Rna Complex, Nucleocapsid (N), Ribonucleoprotein, Respiratory Syncytial Virus (Rsv), Viral Nucleoprotein, Template-Like Assembly, Rna, Virion, Complex, Cytoplasm, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. G. Tawar, S. Duquerroy, C. Vonrhein, P. F. Varela, L. Damier-Piolle, N. Castagne, K. Maclellan, H. Bedouelle, G. Bricogne, D. Bhella, J. Eleouet, F. A. Rey
Crystal Structure Of A Nucleocapsid-Like Nucleoprotein-Rna Complex Of Respiratory Syncytial Virus
Science V. 326 1279 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: BORATE ION (BO4a)
1b: BORATE ION (BO4b)
1c: BORATE ION (BO4c)
1d: BORATE ION (BO4d)
1e: BORATE ION (BO4e)
1f: BORATE ION (BO4f)
1g: BORATE ION (BO4g)
1h: BORATE ION (BO4h)
1i: BORATE ION (BO4i)
1j: BORATE ION (BO4j)
1k: BORATE ION (BO4k)
1l: BORATE ION (BO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BO4
6
Ligand/Ion
BORATE ION
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ASN K:93 , GLY K:94 , ASN S:93 , GLY S:94 , THR S:115
BINDING SITE FOR RESIDUE BO4 K2001
2
AC8
SOFTWARE
ASN L:93 , GLY L:94 , ASN R:93 , GLY R:94 , THR R:115
BINDING SITE FOR RESIDUE BO4 L2001
3
AC9
SOFTWARE
ASN M:93 , GLY M:94 , ASN Q:93 , GLY Q:94 , THR Q:115
BINDING SITE FOR RESIDUE BO4 M2001
4
BC1
SOFTWARE
ASN N:93 , GLY N:94 , ASN P:93 , GLY P:94 , THR P:115
BINDING SITE FOR RESIDUE BO4 N2001
5
BC2
SOFTWARE
ASN O:93 , GLY O:94
BINDING SITE FOR RESIDUE BO4 O2001
6
BC3
SOFTWARE
ASN T:93 , GLY T:94 , THR T:115
BINDING SITE FOR RESIDUE BO4 T2001
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SAPs(SNPs)/Variants
(1, 10)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_NCAP_HRSVA_001 (V267I, chain K/L/M/N/O/P/Q/R/S/T, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_NCAP_HRSVA_001
*
V
267
I
NCAP_HRSVA
---
---
K/L/M/N/O/P/Q/R/S/T
V
267
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(1, 20)
Info
all PFAM domains
1a: PFAM_Pneumo_ncap_2wj8T01 (T:2-375)
1b: PFAM_Pneumo_ncap_2wj8T02 (T:2-375)
1c: PFAM_Pneumo_ncap_2wj8T03 (T:2-375)
1d: PFAM_Pneumo_ncap_2wj8T04 (T:2-375)
1e: PFAM_Pneumo_ncap_2wj8T05 (T:2-375)
1f: PFAM_Pneumo_ncap_2wj8T06 (T:2-375)
1g: PFAM_Pneumo_ncap_2wj8T07 (T:2-375)
1h: PFAM_Pneumo_ncap_2wj8T08 (T:2-375)
1i: PFAM_Pneumo_ncap_2wj8T09 (T:2-375)
1j: PFAM_Pneumo_ncap_2wj8T10 (T:2-375)
1k: PFAM_Pneumo_ncap_2wj8T11 (T:2-375)
1l: PFAM_Pneumo_ncap_2wj8T12 (T:2-375)
1m: PFAM_Pneumo_ncap_2wj8T13 (T:2-375)
1n: PFAM_Pneumo_ncap_2wj8T14 (T:2-375)
1o: PFAM_Pneumo_ncap_2wj8T15 (T:2-375)
1p: PFAM_Pneumo_ncap_2wj8T16 (T:2-375)
1q: PFAM_Pneumo_ncap_2wj8T17 (T:2-375)
1r: PFAM_Pneumo_ncap_2wj8T18 (T:2-375)
1s: PFAM_Pneumo_ncap_2wj8T19 (T:2-375)
1t: PFAM_Pneumo_ncap_2wj8T20 (T:2-375)
View:
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Clans
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)
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(
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Organisms
(
)
(
)
Clan
:
no clan defined [family: Pneumo_ncap]
(1)
Family
:
Pneumo_ncap
(1)
Human respiratory syncytial virus A (strain A2)
(1)
1a
Pneumo_ncap-2wj8T01
T:2-375
1b
Pneumo_ncap-2wj8T02
T:2-375
1c
Pneumo_ncap-2wj8T03
T:2-375
1d
Pneumo_ncap-2wj8T04
T:2-375
1e
Pneumo_ncap-2wj8T05
T:2-375
1f
Pneumo_ncap-2wj8T06
T:2-375
1g
Pneumo_ncap-2wj8T07
T:2-375
1h
Pneumo_ncap-2wj8T08
T:2-375
1i
Pneumo_ncap-2wj8T09
T:2-375
1j
Pneumo_ncap-2wj8T10
T:2-375
1k
Pneumo_ncap-2wj8T11
T:2-375
1l
Pneumo_ncap-2wj8T12
T:2-375
1m
Pneumo_ncap-2wj8T13
T:2-375
1n
Pneumo_ncap-2wj8T14
T:2-375
1o
Pneumo_ncap-2wj8T15
T:2-375
1p
Pneumo_ncap-2wj8T16
T:2-375
1q
Pneumo_ncap-2wj8T17
T:2-375
1r
Pneumo_ncap-2wj8T18
T:2-375
1s
Pneumo_ncap-2wj8T19
T:2-375
1t
Pneumo_ncap-2wj8T20
T:2-375
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (1.2 MB)
Header - Asym.Unit
Biol.Unit 1 (628 KB)
Header - Biol.Unit 1
Biol.Unit 2 (630 KB)
Header - Biol.Unit 2
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