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2WJ2
Asym. Unit
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Asym.Unit (357 KB)
Biol.Unit 1 (348 KB)
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(1)
Title
:
3D-CRYSTAL STRUCTURE OF HUMANIZED-RAT FATTY ACID AMIDE HYDROLASE (FAAH) CONJUGATED WITH 7-PHENYL-1-(5-(PYRIDIN-2-YL)OXAZOL-2-YL)HEPTAN-1-ONE, AN ALPHA-KETOOXAZOLE
Authors
:
M. Mileni, J. Garfunkle, J. K. Demartino, B. F. Cravatt, D. L. Boger, R. C. Stevens
Date
:
19 May 09 (Deposition) - 15 Sep 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Endoplasmic Reticulum, Monotopic Membrane Protein, Membrane, Hydrolase, Transmembrane, Phosphoprotein, Covalent Reversible Inhibitors, Fatty Acid Amide Hydrolase, Golgi Apparatus, Alpha-Ketooxazole
(Keyword Search:
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Reference
:
M. Mileni, J. Garfunkle, J. K. Demartino, B. F. Cravatt, D. L. Boger, R. C. Stevens
Binding And Inactivation Mechanism Of A Humanized Fatty Acid Amide Hydrolase By Alpha- Ketoheterocycle Inhibitors Revealed From Cocrystal Structures.
J. Am. Chem. Soc. V. 131 10497 2009
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 7-PHENYL-1-(5-PYRIDIN-2-YL-1,3-OXA... (OL1a)
2b: 7-PHENYL-1-(5-PYRIDIN-2-YL-1,3-OXA... (OL1b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
OL1
2
Ligand/Ion
7-PHENYL-1-(5-PYRIDIN-2-YL-1,3-OXAZOL-2-YL)HEPTANE-1,1-DIOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:190 , MET A:191 , PHE A:192 , SER A:193 , SER A:217 , THR A:236 , ASP A:237 , ILE A:238 , GLY A:239 , GLY A:240 , SER A:241 , CYS A:269 , LEU A:278 , PHE A:432 , THR A:488 , HOH A:2088
BINDING SITE FOR RESIDUE OL1 A1579
2
AC2
SOFTWARE
LYS B:142 , MET B:191 , PHE B:192 , SER B:193 , TYR B:194 , SER B:217 , THR B:236 , ASP B:237 , ILE B:238 , GLY B:239 , GLY B:240 , SER B:241 , CYS B:269 , PHE B:381 , PHE B:432 , THR B:488 , HOH B:2029
BINDING SITE FOR RESIDUE OL1 B1578
3
AC3
SOFTWARE
ASN A:259 , HOH A:2022 , ASN B:259
BINDING SITE FOR RESIDUE CL A1580
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AMIDASES (A:215-246,B:215-246)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AMIDASES
PS00571
Amidases signature.
FAAH1_RAT
215-246
2
A:215-246
B:215-246
[
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Exons
(15, 30)
Info
All Exons
Exon 1.1a (A:33-65 | B:33-65)
Exon 1.2 (A:66-103 | B:66-103)
Exon 1.3 (A:104-148 | B:104-148)
Exon 1.4 (A:149-193 | B:149-193)
Exon 1.5 (A:193-262 | B:193-262)
Exon 1.6 (A:262-276 | B:262-276)
Exon 1.7 (A:276-317 | B:276-317)
Exon 1.8 (A:318-359 | B:318-359)
Exon 1.9 (A:360-392 | B:360-392)
Exon 1.10 (A:392-425 | B:392-425)
Exon 1.11 (A:426-439 | B:426-439)
Exon 1.12a (A:439-452 | B:439-452)
Exon 1.15b (A:453-489 | B:453-489)
Exon 1.16a (A:489-537 | B:489-537)
Exon 1.17 (A:538-578 | B:538-577)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12a
13: Boundary 1.12a/1.15b
14: Boundary 1.15b/1.16a
15: Boundary 1.16a/1.17
16: Boundary 1.17/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSRNOT00000015961
1a
ENSRNOE00000225920
chr5:
136310965-136311220
256
FAAH1_RAT
1-65
65
2
A:33-65
B:33-65
33
33
1.2
ENSRNOT00000015961
2
ENSRNOE00000103673
chr5:
136318583-136318696
114
FAAH1_RAT
66-103
38
2
A:66-103
B:66-103
38
38
1.3
ENSRNOT00000015961
3
ENSRNOE00000103796
chr5:
136321039-136321173
135
FAAH1_RAT
104-148
45
2
A:104-148
B:104-148
45
45
1.4
ENSRNOT00000015961
4
ENSRNOE00000103928
chr5:
136321369-136321502
134
FAAH1_RAT
149-193
45
2
A:149-193
B:149-193
45
45
1.5
ENSRNOT00000015961
5
ENSRNOE00000104062
chr5:
136321598-136321804
207
FAAH1_RAT
193-262
70
2
A:193-262
B:193-262
70
70
1.6
ENSRNOT00000015961
6
ENSRNOE00000104198
chr5:
136322049-136322089
41
FAAH1_RAT
262-276
15
2
A:262-276
B:262-276
15
15
1.7
ENSRNOT00000015961
7
ENSRNOE00000111834
chr5:
136322314-136322438
125
FAAH1_RAT
276-317
42
2
A:276-317
B:276-317
42
42
1.8
ENSRNOT00000015961
8
ENSRNOE00000104455
chr5:
136323598-136323723
126
FAAH1_RAT
318-359
42
2
A:318-359
B:318-359
42
42
1.9
ENSRNOT00000015961
9
ENSRNOE00000112023
chr5:
136324170-136324267
98
FAAH1_RAT
360-392
33
2
A:360-392
B:360-392
33
33
1.10
ENSRNOT00000015961
10
ENSRNOE00000105978
chr5:
136325413-136325512
100
FAAH1_RAT
392-425
34
2
A:392-425
B:392-425
34
34
1.11
ENSRNOT00000015961
11
ENSRNOE00000106118
chr5:
136325776-136325816
41
FAAH1_RAT
426-439
14
2
A:426-439
B:426-439
14
14
1.12a
ENSRNOT00000015961
12a
ENSRNOE00000318212
chr5:
136326509-136326548
40
FAAH1_RAT
439-452
14
2
A:439-452
B:439-452
14
14
1.15b
ENSRNOT00000015961
15b
ENSRNOE00000225847
chr5:
136326988-136327096
109
FAAH1_RAT
453-489
37
2
A:453-489
B:453-489
37
37
1.16a
ENSRNOT00000015961
16a
ENSRNOE00000110963
chr5:
136327622-136327767
146
FAAH1_RAT
489-537
49
2
A:489-537
B:489-537
49
49
1.17
ENSRNOT00000015961
17
ENSRNOE00000112221
chr5:
136327964-136329817
1854
FAAH1_RAT
538-579
42
2
A:538-578
B:538-577
41
40
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2wj2a_ (A:)
1b: SCOP_d2wj2b_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Amidase signature (AS) enzymes
(41)
Superfamily
:
Amidase signature (AS) enzymes
(41)
Family
:
Amidase signature (AS) enzymes
(41)
Protein domain
:
automated matches
(19)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
1a
d2wj2a_
A:
1b
d2wj2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wj2B00 (B:33-577)
1b: CATH_2wj2A00 (A:33-578)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Amidase signature (AS) enzymes
(22)
Homologous Superfamily
:
Amidase signature (AS) enzymes
(22)
Rat (Rattus norvegicus)
(7)
1a
2wj2B00
B:33-577
1b
2wj2A00
A:33-578
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Amidase_2wj2B01 (B:95-562)
1b: PFAM_Amidase_2wj2B02 (B:95-562)
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Clan
:
no clan defined [family: Amidase]
(17)
Family
:
Amidase
(17)
Rattus norvegicus (Rat)
(15)
1a
Amidase-2wj2B01
B:95-562
1b
Amidase-2wj2B02
B:95-562
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