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2WIJ
Biol. Unit 1
Info
Asym.Unit (103 KB)
Biol.Unit 1 (748 KB)
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(1)
Title
:
NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN ANALOGUE TA5
Authors
:
E. Carletti, N. Aurbek, E. Gillon, M. Loiodice, Y. Nicolet, J. Fontecilla, P. Masson, H. Thiermann, F. Nachon, F. Worek
Date
:
12 May 09 (Deposition) - 19 May 09 (Release) - 27 Apr 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (8x)
Keywords
:
Aging, Hydrolase, Inhibition, Polymorphism, Glycoprotein, Serine Esterase, Disease Mutation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Carletti, N. Aurbek, E. Gillon, M. Loiodice, Y. Nicolet, J. Fontecilla, P. Masson, H. Thiermann, F. Nachon, F. Worek
Structure-Activity Analysis Of Aging And Reactivation Of Human Butyrylcholinesterase Inhibited By Analogues Of Tabun
Biochem. J. V. 421 97 2009
[
close entry info
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Hetero Components
(4, 112)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
2c: BETA-L-FUCOSE (FULc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3a: SODIUM ION (NAa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
6a: ETHYL HYDROGEN ETHYLAMIDOPHOSPHATE (TN7a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FUL
24
Ligand/Ion
BETA-L-FUCOSE
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAG
64
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
16
Ligand/Ion
SULFATE ION
6
TN7
8
Ligand/Ion
ETHYL HYDROGEN ETHYLAMIDOPHOSPHATE
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:116 , GLY A:117 , SER A:198 , ALA A:199 , TRP A:231 , VAL A:288 , HIS A:438
BINDING SITE FOR RESIDUE TN7 A1530
02
AC2
SOFTWARE
PHE A:525
BINDING SITE FOR RESIDUE NA A1531
03
AC3
SOFTWARE
LYS A:323 , TYR A:420 , ARG A:515 , HOH A:2330 , HOH A:2331
BINDING SITE FOR RESIDUE SO4 A1532
04
AC4
SOFTWARE
ARG A:515
BINDING SITE FOR RESIDUE CL A1533
05
AC5
SOFTWARE
GLN A:316 , GLY A:413 , ASN A:414 , ASN A:415
BINDING SITE FOR RESIDUE SO4 A1534
06
AC6
SOFTWARE
ASP A:378 , GLN A:380 , HOH A:2273
BINDING SITE FOR RESIDUE CL A1535
07
AC7
SOFTWARE
ASN A:57 , HOH A:2336 , HOH A:2337
BINDING SITE FOR RESIDUE NAG A1541
08
AC8
SOFTWARE
ARG A:465 , ASN A:485 , HOH A:2338
BINDING SITE FOR RESIDUE NAG A1542
09
AC9
SOFTWARE
ASN A:256 , HOH A:2340
BINDING SITE FOR RESIDUE NAG A1543
10
BC1
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190 , SER A:191 , HOH A:2333 , HOH A:2334 , HOH A:2335
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 106 RESIDUES 1539 TO 1540
11
BC2
SOFTWARE
ASN A:241 , ASN A:245 , LEU A:249 , PHE A:278 , PRO A:281 , HOH A:2341 , HOH A:2342
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 241 RESIDUES 1544 TO 1546
12
BC3
SOFTWARE
GLY A:336 , SER A:338 , ASN A:341 , ASN A:342
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 341 RESIDUES 1536 TO 1538
[
close Site info
]
SAPs(SNPs)/Variants
(42, 336)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_072094 (K12R, chain A, )
02: VAR_040012 (T24M, chain A, )
03: VAR_040013 (F28I, chain A, )
04: VAR_040014 (Y33C, chain A, )
05: VAR_072730 (A34V, chain A, )
06: VAR_040015 (P37S, chain A, )
07: VAR_002360 (D70G, chain A, )
08: VAR_040016 (D70H, chain A, )
09: VAR_072095 (G75R, chain A, )
10: VAR_072096 (E90D, chain A, )
11: VAR_040017 (N96Y, chain A, )
12: VAR_072097 (I99M, chain A, )
13: VAR_040018 (P100S, chain A, )
14: VAR_040019 (G115D, chain A, )
15: VAR_040020 (L125F, chain A, )
16: VAR_040021 (Y128C, chain A, )
17: VAR_040022 (V142M, chain A, )
18: VAR_040023 (D170E, chain A, )
19: VAR_040024 (S198G, chain A, )
20: VAR_040025 (A199V, chain A, )
21: VAR_040026 (A201T, chain A, )
22: VAR_072098 (V204D, chain A, )
23: VAR_040027 (T243M, chain A, )
24: VAR_040028 (T250P, chain A, )
25: VAR_040029 (E255D, chain A, )
26: VAR_040030 (K267R, chain A, )
27: VAR_072099 (V294M, chain A, )
28: VAR_040031 (L307P, chain A, )
29: VAR_040032 (A328D, chain A, )
30: VAR_002362 (L330I, chain A, )
31: VAR_072100 (G333C, chain A, )
32: VAR_040033 (G365R, chain A, )
33: VAR_040034 (R386C, chain A, )
34: VAR_040035 (G390V, chain A, )
35: VAR_040036 (F418S, chain A, )
36: VAR_040037 (E460K, chain A, )
37: VAR_072101 (R470W, chain A, )
38: VAR_040038 (W471R, chain A, )
39: VAR_040039 (F474L, chain A, )
40: VAR_040040 (E497V, chain A, )
41: VAR_040041 (R515C, chain A, )
42: VAR_040042 (Q518L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072094
K
40
R
CHLE_HUMAN
Polymorphism
116047990
A
K
12
R
02
UniProt
VAR_040012
T
52
M
CHLE_HUMAN
Disease (BChE deficiency)
56309853
A
T
24
M
03
UniProt
VAR_040013
F
56
I
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
28
I
04
UniProt
VAR_040014
Y
61
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
33
C
05
UniProt
VAR_072730
A
62
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
34
V
06
UniProt
VAR_040015
P
65
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
P
37
S
07
UniProt
VAR_002360
D
98
G
CHLE_HUMAN
Disease (BChE deficiency)
1799807
A
D
70
G
08
UniProt
VAR_040016
D
98
H
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
70
H
09
UniProt
VAR_072095
G
103
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
75
R
10
UniProt
VAR_072096
E
118
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
90
D
11
UniProt
VAR_040017
N
124
Y
CHLE_HUMAN
Disease (BChE deficiency)
---
A
N
96
Y
12
UniProt
VAR_072097
I
127
M
CHLE_HUMAN
Polymorphism
---
A
I
99
M
13
UniProt
VAR_040018
P
128
S
CHLE_HUMAN
Disease (BChE deficiency)
3732880
A
P
100
S
14
UniProt
VAR_040019
G
143
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
115
D
15
UniProt
VAR_040020
L
153
F
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
125
F
16
UniProt
VAR_040021
Y
156
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
128
C
17
UniProt
VAR_040022
V
170
M
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
142
M
18
UniProt
VAR_040023
D
198
E
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
170
E
19
UniProt
VAR_040024
S
226
G
CHLE_HUMAN
Disease (BChE deficiency)
---
A
S
198
G
20
UniProt
VAR_040025
A
227
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
199
V
21
UniProt
VAR_040026
A
229
T
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
201
T
22
UniProt
VAR_072098
V
232
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
204
D
23
UniProt
VAR_040027
T
271
M
CHLE_HUMAN
Disease (BChE deficiency)
28933389
A
T
243
M
24
UniProt
VAR_040028
T
278
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
T
250
P
25
UniProt
VAR_040029
E
283
D
CHLE_HUMAN
Polymorphism
16849700
A
E
255
D
26
UniProt
VAR_040030
K
295
R
CHLE_HUMAN
Disease (BChE deficiency)
115624085
A
K
267
R
27
UniProt
VAR_072099
V
322
M
CHLE_HUMAN
Polymorphism
---
A
V
294
M
28
UniProt
VAR_040031
L
335
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
307
P
29
UniProt
VAR_040032
A
356
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
328
D
30
UniProt
VAR_002362
L
358
I
CHLE_HUMAN
Disease (BChE deficiency)
121918557
A
L
330
I
31
UniProt
VAR_072100
G
361
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
333
C
32
UniProt
VAR_040033
G
393
R
CHLE_HUMAN
Disease (BChE deficiency)
115129687
A
G
365
R
33
UniProt
VAR_040034
R
414
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
386
C
34
UniProt
VAR_040035
G
418
V
CHLE_HUMAN
Disease (BChE deficiency)
28933390
A
G
390
V
35
UniProt
VAR_040036
F
446
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
418
S
36
UniProt
VAR_040037
E
488
K
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
460
K
37
UniProt
VAR_072101
R
498
W
CHLE_HUMAN
Polymorphism
115017300
A
R
470
W
38
UniProt
VAR_040038
W
499
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
W
471
R
39
UniProt
VAR_040039
F
502
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
474
L
40
UniProt
VAR_040040
E
525
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
497
V
41
UniProt
VAR_040041
R
543
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
515
C
42
UniProt
VAR_040042
Q
546
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Q
518
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:90-100)
2: CARBOXYLESTERASE_B_1 (A:185-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
CHLE_HUMAN
118-128
8
A:90-100
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
CHLE_HUMAN
213-228
8
A:185-200
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wija_ (A:)
View:
Select:
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Classes
(
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(
)
Folds
(
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(
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Superfamilies
(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
automated matches
(91)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d2wija_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wijA00 (A:3-529)
View:
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Topologies
(
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(
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
2wijA00
A:3-529
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_COesterase_2wijA01 (A:3-522)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
COesterase
(79)
Homo sapiens (Human)
(38)
1a
COesterase-2wijA01
A:3-522
[
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]
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