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2WHO
Asym. Unit
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Asym.Unit (186 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR
Authors
:
S. Di Marco
Date
:
05 May 09 (Deposition) - 11 Aug 09 (Release) - 10 Nov 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Rna Replication, Envelope Protein, Hepatitis C Virus, Endoplasmic Reticulum, Non Nucleoside Inhibitor, Viral Protein, Metal-Binding, Transmembrane, Polymerase, Atp-Binding, Genotype 1B, Rna-Binding, Rna-Dependent Rna Polymerase, Nni, Hcv, Ns5B, Membrane, Helicase, Hydrolase, Nucleotide-Binding, Allosteric Inhibitor, Rna-Directed Rna Polymerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. M. Ontoria, E. H. Rydberg, S. Di Marco, L. Tomei, B. Attenni, S. Malancona, J. I. M. Hernando, N. Gennari, U. Koch, F. Narjes, M. Rowley, V. Summa, S. S. Carroll, D. B. Olsen, R. De Francesco, S. Altamura, G. Migliaccio, A. Carfi
Identification And Biological Evaluation Of A Series Of 1H-Benzo[De]Isoquinoline-1, 3(2H)-Diones As Hepatitis C Virus Ns5B Polymerase Inhibitors
J. Med. Chem. V. 52 5217 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: 2-(3-BROMOPHENYL)-6-[(2-HYDROXYETH... (VGIa)
2b: 2-(3-BROMOPHENYL)-6-[(2-HYDROXYETH... (VGIb)
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No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
VGI
2
Ligand/Ion
2-(3-BROMOPHENYL)-6-[(2-HYDROXYETHYL)AMINO]-1H-BENZO[DE]ISOQUINOLINE-1,3(2H)-DIONE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:220 , ASP A:318 , ASP A:319 , MN A:1533 , HOH A:2254 , HOH A:2255 , HOH A:2256
BINDING SITE FOR RESIDUE MN A1532
2
AC2
SOFTWARE
ASP A:220 , THR A:221 , ASP A:318 , MN A:1532 , HOH A:2254 , HOH A:2257 , HOH A:2258
BINDING SITE FOR RESIDUE MN A1533
3
AC3
SOFTWARE
ASP B:220 , ASP B:318 , ASP B:319 , MN B:1533 , HOH B:2257
BINDING SITE FOR RESIDUE MN B1532
4
AC4
SOFTWARE
ASP B:220 , THR B:221 , ASP B:318 , MN B:1532 , HOH B:2257 , HOH B:2258 , HOH B:2259
BINDING SITE FOR RESIDUE MN B1533
5
AC5
SOFTWARE
ARG B:422 , MET B:423 , LEU B:474 , HIS B:475 , ARG B:501 , TRP B:528 , HOH B:2260
BINDING SITE FOR RESIDUE VGI B1534
6
AC6
SOFTWARE
ARG A:422 , MET A:423 , LEU A:474 , ALA A:486 , ARG A:501 , TRP A:528 , HOH A:2259
BINDING SITE FOR RESIDUE VGI A1534
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 2)
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All PROSITE Patterns/Profiles
1: RDRP_SSRNA_POS (A:214-332,B:214-332)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RDRP_SSRNA_POS
PS50507
RdRp of positive ssRNA viruses catalytic domain profile.
POLG_HCVBK
2633-2751
2
A:214-332
B:214-332
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2whoa_ (A:)
1b: SCOP_d2whob_ (B:)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
RNA-dependent RNA-polymerase
(253)
Protein domain
:
Viral RNA polymerase
(148)
Hepatitis C virus [TaxId: 11103]
(72)
1a
d2whoa_
A:
1b
d2whob_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_RdRP_3_2whoB01 (B:3-514)
1b: PFAM_RdRP_3_2whoB02 (B:3-514)
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Clan
:
RdRP
(210)
Family
:
RdRP_3
(43)
Hepatitis C virus genotype 1b (isolate BK) (HCV)
(10)
1a
RdRP_3-2whoB01
B:3-514
1b
RdRP_3-2whoB02
B:3-514
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Asymmetric Unit 1
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Asym.Unit (186 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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