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Asym. Unit
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Asym.Unit (145 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
CELLVIBRIO JAPONICUS MAN26A E121A AND E320G DOUBLE MUTANT IN COMPLEX WITH MANNOBIOSE
Authors
:
V. M. A. Ducros, G. J. Davies, J. E. Flint, H. J. Gilbert
Date
:
05 May 09 (Deposition) - 26 May 09 (Release) - 18 Mar 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoside Hydrolase, Man26, Gh-A Clan, Hydrolase, Mannanase, Glycosidase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. E. Tailford, V. M. A. Ducros, J. E. Flint, S. M. Roberts, C. Morland, D. L. Zechel, N. Smith, M. E. Bjornvad, T. V. Borchert, K. S. Wilson, G. J. Davies, H. J. Gilbert
Understanding How Diverse -Mannanases Recognise Heterogeneous Substrates.
Biochemistry V. 48 7009 2009
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-D-MANNOSE (MANa)
3a: SODIUM ION (NAa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
4b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NA
1
Ligand/Ion
SODIUM ION
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
ZN
1
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:67 , HIS A:71 , GLU A:239 , TRS A:1426
BINDING SITE FOR RESIDUE ZN A1424
2
AC2
SOFTWARE
ARG A:69 , SER A:72 , ILE A:73 , ARG A:352 , GLU A:353 , ILE A:354
BINDING SITE FOR RESIDUE NA A1425
3
AC3
SOFTWARE
GLU A:67 , HIS A:71 , GLN A:232 , ARG A:235 , TYR A:236 , GLU A:239 , TRP A:276 , ZN A:1424 , HOH A:2413 , HOH A:2414 , HOH A:2415
BINDING SITE FOR RESIDUE TRS A1426
4
AC4
SOFTWARE
TYR A:400 , ALA A:401 , ASP A:402 , GLU A:403 , THR A:405 , PHE A:407 , ASP A:410
BINDING SITE FOR RESIDUE TRS A1427
5
AC5
SOFTWARE
HIS A:143 , GLU A:212 , TYR A:285 , ALA A:325 , TRP A:360 , TRP A:379 , BMA A:1429 , HOH A:2280 , HOH A:2416 , HOH A:2417 , HOH A:2418
BINDING SITE FOR RESIDUE MAN A1428
6
AC6
SOFTWARE
LEU A:113 , TRP A:162 , TRP A:360 , ARG A:361 , HIS A:377 , MAN A:1428 , HOH A:2419 , HOH A:2420 , HOH A:2421 , HOH A:2422 , HOH A:2423
BINDING SITE FOR RESIDUE BMA A1429
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GH26 (A:56-409)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH26
PS51764
Glycosyl hydrolases family 26 (GH26) domain profile.
MANA_CELJU
56-409
1
A:56-409
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2whma_ (A:)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
automated matches
(49)
Pseudomonas cellulosa (Cellvibrio japonicus) [TaxId: 155077]
(1)
1a
d2whma_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2whmA00 (A:43-423)
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Organisms
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)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Cellvibrio japonicus. Organism_taxid: 155077.
(10)
1a
2whmA00
A:43-423
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_26_2whmA01 (A:50-350)
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Clans
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)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_26
(6)
Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp. cellulosa)
(3)
1a
Glyco_hydro_26-2whmA01
A:50-350
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Asymmetric Unit 1
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