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2WGS
Biol. Unit 1
Info
Asym.Unit (921 KB)
Biol.Unit 1 (910 KB)
Biol.Unit 2 (461 KB)
Biol.Unit 3 (461 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS GLUTAMINE SYNTHETASE IN COMPLEX WITH A PURINE ANALOGUE INHIBITOR.
Authors
:
M. T. Nilsson, W. W. Krajewski, T. A. Jones, S. L. Mowbray
Date
:
27 Apr 09 (Deposition) - 01 Sep 09 (Release) - 13 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,D,E,F (1x)
Biol. Unit 3: G,H,I,J,K,L (1x)
Keywords
:
Relaxed State, Purine Analogue, Nucleotide-Binding, Glna1, Mt2278, Ligase, Rv2220, Cytoplasm, Synthetase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. T. Nilsson, W. W. Krajewski, S. Yellagunda, S. Prabhumurthy, G. N. Chamarahally, C. Siddamadappa, B. R. Srinivasa, S. Yahiaoui, M. Larhed, A. Karlen, T. A. Jones, S. L. Mowbray
Structural Basis For The Inhibition Of Mycobacterium Tuberculosis Glutamine Synthetase By Novel Atp-Competitive Inhibitors.
J. Mol. Biol. V. 393 504 2009
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZa)
1b: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZb)
1c: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZc)
1d: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZd)
1e: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZe)
1f: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZf)
1g: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZg)
1h: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZh)
1i: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZi)
1j: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZj)
1k: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZk)
1l: 1-(3,4-DICHLOROBENZYL)-3,7-DIMETHY... (1AZl)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
2h: CHLORIDE ION (CLh)
2i: CHLORIDE ION (CLi)
2j: CHLORIDE ION (CLj)
2k: CHLORIDE ION (CLk)
2l: CHLORIDE ION (CLl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1AZ
12
Ligand/Ion
1-(3,4-DICHLOROBENZYL)-3,7-DIMETHYL-8-MORPHOLIN-4-YL-3,7-DIHYDRO-1H-PURINE-2,6-DIONE
2
CL
-1
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:129 , GLY A:131 , GLU A:133 , ASN A:229 , TYR A:230 , PHE A:232 , HIS A:278 , SER A:280 , TRP A:282 , LYS A:361 , ARG A:364
BINDING SITE FOR RESIDUE 1AZ A 501
02
AC2
SOFTWARE
LEU A:423 , SER A:424
BINDING SITE FOR RESIDUE CL A 502
03
AC3
SOFTWARE
TYR B:129 , PHE B:130 , GLY B:131 , GLU B:133 , ASN B:229 , TYR B:230 , PHE B:232 , HIS B:278 , SER B:280 , TRP B:282 , LYS B:361 , ARG B:364
BINDING SITE FOR RESIDUE 1AZ B 501
04
AC4
SOFTWARE
LEU B:423 , SER B:424
BINDING SITE FOR RESIDUE CL B 502
05
AC5
SOFTWARE
TYR C:129 , PHE C:130 , GLY C:131 , GLU C:133 , ASN C:229 , TYR C:230 , PHE C:232 , HIS C:278 , SER C:280 , TRP C:282 , LYS C:361 , ARG C:364
BINDING SITE FOR RESIDUE 1AZ C 501
06
AC6
SOFTWARE
LEU C:423 , SER C:424
BINDING SITE FOR RESIDUE CL C 502
07
AC7
SOFTWARE
TYR D:129 , PHE D:130 , GLY D:131 , GLU D:133 , ASN D:229 , TYR D:230 , PHE D:232 , HIS D:278 , SER D:280 , TRP D:282 , LYS D:361 , ARG D:364
BINDING SITE FOR RESIDUE 1AZ D 501
08
AC8
SOFTWARE
LEU D:423 , SER D:424
BINDING SITE FOR RESIDUE CL D 502
09
AC9
SOFTWARE
TYR E:129 , PHE E:130 , GLY E:131 , GLU E:133 , ASN E:229 , TYR E:230 , PHE E:232 , HIS E:278 , SER E:280 , TRP E:282 , LYS E:361 , ARG E:364
BINDING SITE FOR RESIDUE 1AZ E 501
10
BC1
SOFTWARE
LEU E:423 , SER E:424 , HOH E:2120
BINDING SITE FOR RESIDUE CL E 502
11
BC2
SOFTWARE
TYR F:129 , PHE F:130 , GLY F:131 , GLU F:133 , ASN F:229 , TYR F:230 , PHE F:232 , HIS F:278 , SER F:280 , TRP F:282 , LYS F:361 , ARG F:364
BINDING SITE FOR RESIDUE 1AZ F 501
12
BC3
SOFTWARE
LEU F:423 , SER F:424
BINDING SITE FOR RESIDUE CL F 502
13
BC4
SOFTWARE
TYR G:129 , GLY G:131 , GLU G:133 , ASN G:229 , TYR G:230 , PHE G:232 , HIS G:278 , SER G:280 , TRP G:282 , LYS G:361 , ARG G:364
BINDING SITE FOR RESIDUE 1AZ G 501
14
BC5
SOFTWARE
LEU G:423 , SER G:424
BINDING SITE FOR RESIDUE CL G 502
15
BC6
SOFTWARE
TYR H:129 , GLY H:131 , GLU H:133 , ASN H:229 , TYR H:230 , PHE H:232 , HIS H:278 , SER H:280 , TRP H:282 , LYS H:361 , ARG H:364
BINDING SITE FOR RESIDUE 1AZ H 501
16
BC7
SOFTWARE
LEU H:423 , SER H:424
BINDING SITE FOR RESIDUE CL H 502
17
BC8
SOFTWARE
TYR I:129 , PHE I:130 , GLY I:131 , GLU I:133 , ASN I:229 , TYR I:230 , PHE I:232 , HIS I:278 , SER I:280 , TRP I:282 , LYS I:361 , ARG I:364
BINDING SITE FOR RESIDUE 1AZ I 501
18
BC9
SOFTWARE
LEU I:423 , SER I:424
BINDING SITE FOR RESIDUE CL I 502
19
CC1
SOFTWARE
TYR J:129 , PHE J:130 , GLY J:131 , GLU J:133 , ASN J:229 , TYR J:230 , PHE J:232 , HIS J:278 , SER J:280 , TRP J:282 , LYS J:361 , ARG J:364
BINDING SITE FOR RESIDUE 1AZ J 501
20
CC2
SOFTWARE
LEU J:423 , SER J:424
BINDING SITE FOR RESIDUE CL J 502
21
CC3
SOFTWARE
TYR K:129 , PHE K:130 , GLY K:131 , GLU K:133 , ASN K:229 , TYR K:230 , PHE K:232 , HIS K:278 , SER K:280 , TRP K:282 , LYS K:361 , ARG K:364
BINDING SITE FOR RESIDUE 1AZ K 501
22
CC4
SOFTWARE
LEU K:423 , SER K:424
BINDING SITE FOR RESIDUE CL K 502
23
CC5
SOFTWARE
TYR L:129 , PHE L:130 , GLY L:131 , GLU L:133 , ASN L:229 , TYR L:230 , PHE L:232 , HIS L:278 , SER L:280 , TRP L:282 , LYS L:361 , ARG L:364
BINDING SITE FOR RESIDUE 1AZ L 501
24
CC6
SOFTWARE
LEU L:423 , SER L:424
BINDING SITE FOR RESIDUE CL L 502
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 72)
Info
All PROSITE Patterns/Profiles
1: GLNA_1 (A:53-71,B:53-71,C:53-71,D:53-71,E:...)
2: GLNA_ATP (A:265-280,B:265-280,C:265-280,D:26...)
3: GLNA_ADENYLATION (A:394-404,B:394-404,C:394-404,D:39...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLNA_1
PS00180
Glutamine synthetase signature 1.
GLN1B_MYCTO
53-71
12
A:53-71
B:53-71
C:53-71
D:53-71
E:53-71
F:53-71
G:53-71
H:53-71
I:53-71
J:53-71
K:53-71
L:53-71
GLN1B_MYCTU
53-71
12
A:53-71
B:53-71
C:53-71
D:53-71
E:53-71
F:53-71
G:53-71
H:53-71
I:53-71
J:53-71
K:53-71
L:53-71
2
GLNA_ATP
PS00181
Glutamine synthetase putative ATP-binding region signature.
GLN1B_MYCTO
265-280
12
A:265-280
B:265-280
C:265-280
D:265-280
E:265-280
F:265-280
G:265-280
H:265-280
I:265-280
J:265-280
K:265-280
L:265-280
GLN1B_MYCTU
265-280
12
A:265-280
B:265-280
C:265-280
D:265-280
E:265-280
F:265-280
G:265-280
H:265-280
I:265-280
J:265-280
K:265-280
L:265-280
3
GLNA_ADENYLATION
PS00182
Glutamine synthetase class-I adenylation site.
GLN1B_MYCTO
394-406
12
A:394-404
B:394-404
C:394-404
D:394-404
E:394-404
F:394-404
G:394-404
H:394-404
I:394-404
J:394-404
K:394-404
L:394-404
GLN1B_MYCTU
394-406
12
A:394-404
B:394-404
C:394-404
D:394-404
E:394-404
F:394-404
G:394-404
H:394-404
I:394-404
J:394-404
K:394-404
L:394-404
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d2wgsa1 (A:4-104)
1b: SCOP_d2wgsb1 (B:4-104)
1c: SCOP_d2wgsc1 (C:4-104)
1d: SCOP_d2wgsd1 (D:4-104)
1e: SCOP_d2wgse1 (E:4-104)
1f: SCOP_d2wgsf1 (F:4-104)
1g: SCOP_d2wgsg1 (G:4-104)
1h: SCOP_d2wgsh1 (H:4-104)
1i: SCOP_d2wgsi1 (I:4-104)
1j: SCOP_d2wgsj1 (J:4-104)
1k: SCOP_d2wgsk1 (K:4-104)
1l: SCOP_d2wgsl1 (L:4-104)
2a: SCOP_d2wgsa2 (A:105-478)
2b: SCOP_d2wgsb2 (B:105-478)
2c: SCOP_d2wgsc2 (C:105-478)
2d: SCOP_d2wgsd2 (D:105-478)
2e: SCOP_d2wgse2 (E:105-478)
2f: SCOP_d2wgsf2 (F:105-478)
2g: SCOP_d2wgsg2 (G:105-478)
2h: SCOP_d2wgsh2 (H:105-478)
2i: SCOP_d2wgsi2 (I:105-478)
2j: SCOP_d2wgsj2 (J:105-478)
2k: SCOP_d2wgsk2 (K:105-478)
2l: SCOP_d2wgsl2 (L:105-478)
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Glutamine synthetase, N-terminal domain
(20)
Family
:
automated matches
(12)
Protein domain
:
automated matches
(12)
Mycobacterium tuberculosis [TaxId: 83332]
(6)
1a
d2wgsa1
A:4-104
1b
d2wgsb1
B:4-104
1c
d2wgsc1
C:4-104
1d
d2wgsd1
D:4-104
1e
d2wgse1
E:4-104
1f
d2wgsf1
F:4-104
1g
d2wgsg1
G:4-104
1h
d2wgsh1
H:4-104
1i
d2wgsi1
I:4-104
1j
d2wgsj1
J:4-104
1k
d2wgsk1
K:4-104
1l
d2wgsl1
L:4-104
Fold
:
Glutamine synthetase/guanido kinase
(68)
Superfamily
:
Glutamine synthetase/guanido kinase
(68)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Mycobacterium tuberculosis [TaxId: 83332]
(6)
2a
d2wgsa2
A:105-478
2b
d2wgsb2
B:105-478
2c
d2wgsc2
C:105-478
2d
d2wgsd2
D:105-478
2e
d2wgse2
E:105-478
2f
d2wgsf2
F:105-478
2g
d2wgsg2
G:105-478
2h
d2wgsh2
H:105-478
2i
d2wgsi2
I:105-478
2j
d2wgsj2
J:105-478
2k
d2wgsk2
K:105-478
2l
d2wgsl2
L:105-478
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_2wgsA02 (A:108-466)
1b: CATH_2wgsE02 (E:108-466)
1c: CATH_2wgsF02 (F:108-466)
1d: CATH_2wgsG02 (G:108-466)
1e: CATH_2wgsH02 (H:108-466)
1f: CATH_2wgsI02 (I:108-466)
1g: CATH_2wgsJ02 (J:108-466)
1h: CATH_2wgsK02 (K:108-466)
1i: CATH_2wgsL02 (L:108-466)
1j: CATH_2wgsB02 (B:108-466)
1k: CATH_2wgsC02 (C:108-466)
1l: CATH_2wgsD02 (D:108-466)
2a: CATH_2wgsA01 (A:5-107)
2b: CATH_2wgsE01 (E:5-107)
2c: CATH_2wgsF01 (F:5-107)
2d: CATH_2wgsG01 (G:5-107)
2e: CATH_2wgsH01 (H:5-107)
2f: CATH_2wgsI01 (I:5-107)
2g: CATH_2wgsJ01 (J:5-107)
2h: CATH_2wgsK01 (K:5-107)
2i: CATH_2wgsL01 (L:5-107)
2j: CATH_2wgsB01 (B:5-107)
2k: CATH_2wgsC01 (C:5-107)
2l: CATH_2wgsD01 (D:5-107)
View:
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Creatine Kinase; Chain A, domain 2
(27)
Homologous Superfamily
:
Creatine Kinase; Chain
(27)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(2)
1a
2wgsA02
A:108-466
1b
2wgsE02
E:108-466
1c
2wgsF02
F:108-466
1d
2wgsG02
G:108-466
1e
2wgsH02
H:108-466
1f
2wgsI02
I:108-466
1g
2wgsJ02
J:108-466
1h
2wgsK02
K:108-466
1i
2wgsL02
L:108-466
1j
2wgsB02
B:108-466
1k
2wgsC02
C:108-466
1l
2wgsD02
D:108-466
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.70, no name defined]
(11)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(2)
2a
2wgsA01
A:5-107
2b
2wgsE01
E:5-107
2c
2wgsF01
F:5-107
2d
2wgsG01
G:5-107
2e
2wgsH01
H:5-107
2f
2wgsI01
I:5-107
2g
2wgsJ01
J:5-107
2h
2wgsK01
K:5-107
2i
2wgsL01
L:5-107
2j
2wgsB01
B:5-107
2k
2wgsC01
C:5-107
2l
2wgsD01
D:5-107
[
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Pfam Domains
(0, 0)
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