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2WGG
Biol. Unit 3
Info
Asym.Unit (528 KB)
Biol.Unit 1 (138 KB)
Biol.Unit 2 (137 KB)
Biol.Unit 3 (136 KB)
Biol.Unit 4 (136 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS C171Q KASA VARIANT WITH BOUND TLM
Authors
:
S. R. Luckner, C. Kisker
Date
:
17 Apr 09 (Deposition) - 21 Jul 09 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Beta Ketoacyl Synthase I, Cytoplasm, Transferase, Acyltransferase, Lipid Synthesis, Fatty Acid Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. R. Luckner, C. A. Machutta, P. J. Tonge, C. Kisker
Crystal Structures Of Mycobacterium Tuberculosis Kasa Show Mode Of Action Within Cell Wall Biosynthesis And Its Inhibition By Thiolactomycin
Structure V. 17 1004 2009
[
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
1b: NONAETHYLENE GLYCOL (2PEb)
1c: NONAETHYLENE GLYCOL (2PEc)
1d: NONAETHYLENE GLYCOL (2PEd)
1e: NONAETHYLENE GLYCOL (2PEe)
1f: NONAETHYLENE GLYCOL (2PEf)
1g: NONAETHYLENE GLYCOL (2PEg)
1h: NONAETHYLENE GLYCOL (2PEh)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
2h: SODIUM ION (NAh)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
3g: DI(HYDROXYETHYL)ETHER (PEGg)
4a: THIOLACTOMYCIN (TLMa)
4b: THIOLACTOMYCIN (TLMb)
4c: THIOLACTOMYCIN (TLMc)
4d: THIOLACTOMYCIN (TLMd)
4e: THIOLACTOMYCIN (TLMe)
4f: THIOLACTOMYCIN (TLMf)
4g: THIOLACTOMYCIN (TLMg)
4h: THIOLACTOMYCIN (TLMh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
2
Ligand/Ion
NONAETHYLENE GLYCOL
2
NA
-1
Ligand/Ion
SODIUM ION
3
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
TLM
2
Ligand/Ion
THIOLACTOMYCIN
[
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Sites
(7, 7)
Info
All Sites
1: BC8 (SOFTWARE)
2: BC9 (SOFTWARE)
3: CC1 (SOFTWARE)
4: CC2 (SOFTWARE)
5: CC3 (SOFTWARE)
6: CC4 (SOFTWARE)
7: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC8
SOFTWARE
GLN E:171 , VAL E:278 , ALA E:279 , PRO E:280 , HIS E:311 , THR E:313 , HIS E:345 , PHE E:402 , PHE E:404
BINDING SITE FOR RESIDUE TLM E1417
2
BC9
SOFTWARE
ASN E:309 , ALA E:310 , HIS E:311 , GLU E:354 , ASN E:399 , ASN E:400
BINDING SITE FOR RESIDUE NA E1418
3
CC1
SOFTWARE
GLY E:115 , GLU E:120 , PRO E:201 , LEU E:205 , ALA E:209 , MET F:146
BINDING SITE FOR RESIDUE 2PE E1419
4
CC2
SOFTWARE
GLN F:171 , PHE F:237 , VAL F:278 , ALA F:279 , PRO F:280 , HIS F:311 , THR F:313 , HIS F:345 , PHE F:402 , GLY F:403 , PHE F:404 , GLY F:406
BINDING SITE FOR RESIDUE TLM F1417
5
CC3
SOFTWARE
ASN F:309 , ALA F:310 , HIS F:311 , GLU F:354 , ASN F:399 , ASN F:400
BINDING SITE FOR RESIDUE NA F1418
6
CC4
SOFTWARE
GLU F:199 , GLY F:200 , PHE F:210 , PHE F:239 , HIS F:345 , 2PE F:1420
BINDING SITE FOR RESIDUE PEG F1419
7
CC5
SOFTWARE
ILE E:145 , GLY F:115 , ALA F:119 , GLU F:120 , PRO F:201 , ILE F:347 , PEG F:1419
BINDING SITE FOR RESIDUE 2PE F1420
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d2wgga1 (A:2-259)
1b: SCOP_d2wgge1 (E:2-259)
1c: SCOP_d2wgge2 (E:260-416)
1d: SCOP_d2wggf1 (F:2-259)
1e: SCOP_d2wggf2 (F:260-416)
1f: SCOP_d2wggg1 (G:2-259)
1g: SCOP_d2wggg2 (G:260-416)
1h: SCOP_d2wggh1 (H:2-259)
1i: SCOP_d2wggh2 (H:260-416)
1j: SCOP_d2wgga2 (A:260-416)
1k: SCOP_d2wggb1 (B:2-259)
1l: SCOP_d2wggb2 (B:260-416)
1m: SCOP_d2wggc1 (C:2-259)
1n: SCOP_d2wggc2 (C:260-416)
1o: SCOP_d2wggd1 (D:2-259)
1p: SCOP_d2wggd2 (D:260-416)
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)
(
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(
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Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Mycobacterium tuberculosis [TaxId: 1773]
(11)
1a
d2wgga1
A:2-259
1b
d2wgge1
E:2-259
1c
d2wgge2
E:260-416
1d
d2wggf1
F:2-259
1e
d2wggf2
F:260-416
1f
d2wggg1
G:2-259
1g
d2wggg2
G:260-416
1h
d2wggh1
H:2-259
1i
d2wggh2
H:260-416
1j
d2wgga2
A:260-416
1k
d2wggb1
B:2-259
1l
d2wggb2
B:260-416
1m
d2wggc1
C:2-259
1n
d2wggc2
C:260-416
1o
d2wggd1
D:2-259
1p
d2wggd2
D:260-416
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_Ketoacyl_synt_C_2wggH01 (H:262-374)
1b: PFAM_Ketoacyl_synt_C_2wggH02 (H:262-374)
1c: PFAM_Ketoacyl_synt_C_2wggH03 (H:262-374)
1d: PFAM_Ketoacyl_synt_C_2wggH04 (H:262-374)
1e: PFAM_Ketoacyl_synt_C_2wggH05 (H:262-374)
1f: PFAM_Ketoacyl_synt_C_2wggH06 (H:262-374)
1g: PFAM_Ketoacyl_synt_C_2wggH07 (H:262-374)
1h: PFAM_Ketoacyl_synt_C_2wggH08 (H:262-374)
2a: PFAM_ketoacyl_synt_2wggH09 (H:11-254)
2b: PFAM_ketoacyl_synt_2wggH10 (H:11-254)
2c: PFAM_ketoacyl_synt_2wggH11 (H:11-254)
2d: PFAM_ketoacyl_synt_2wggH12 (H:11-254)
2e: PFAM_ketoacyl_synt_2wggH13 (H:11-254)
2f: PFAM_ketoacyl_synt_2wggH14 (H:11-254)
2g: PFAM_ketoacyl_synt_2wggH15 (H:11-254)
2h: PFAM_ketoacyl_synt_2wggH16 (H:11-254)
View:
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Ketoacyl-synt_C
(19)
Mycobacterium tuberculosis
(4)
1a
Ketoacyl-synt_C-2wggH01
H:262-374
1b
Ketoacyl-synt_C-2wggH02
H:262-374
1c
Ketoacyl-synt_C-2wggH03
H:262-374
1d
Ketoacyl-synt_C-2wggH04
H:262-374
1e
Ketoacyl-synt_C-2wggH05
H:262-374
1f
Ketoacyl-synt_C-2wggH06
H:262-374
1g
Ketoacyl-synt_C-2wggH07
H:262-374
1h
Ketoacyl-synt_C-2wggH08
H:262-374
Family
:
ketoacyl-synt
(19)
Mycobacterium tuberculosis
(4)
2a
ketoacyl-synt-2wggH09
H:11-254
2b
ketoacyl-synt-2wggH10
H:11-254
2c
ketoacyl-synt-2wggH11
H:11-254
2d
ketoacyl-synt-2wggH12
H:11-254
2e
ketoacyl-synt-2wggH13
H:11-254
2f
ketoacyl-synt-2wggH14
H:11-254
2g
ketoacyl-synt-2wggH15
H:11-254
2h
ketoacyl-synt-2wggH16
H:11-254
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