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2WG4
Asym. Unit
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Asym.Unit (197 KB)
Biol.Unit 1 (190 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING PROTEIN HIP AND SONIC HEDGEHOG WITHOUT CALCIUM
Authors
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Date
:
15 Apr 09 (Deposition) - 30 Jun 09 (Release) - 21 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Autocatalytic Cleavage, Protease, Membrane, Secreted, Palmitate, Hydrolase, Signal Transduction, Developmental Protein, Signaling Protein, Lipoprotein, Development, Glycoprotein, Cell Membrane, Disulfide Bond, Egf-Like Domain, Hedgehog Signaling
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Structural Insights Into Hedgehog Ligand Sequestration By The Human Hedgehog-Interacting Protein Hip
Nat. Struct. Mol. Biol. V. 16 698 2009
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
1c: SODIUM ION (NAc)
1d: SODIUM ION (NAd)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
4
Ligand/Ion
SODIUM ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:141 , ASP A:148 , HIS A:183 , ASP B:383
BINDING SITE FOR RESIDUE ZN A1190
2
AC2
SOFTWARE
ARG B:410 , SER B:411 , ASN B:412 , ASP B:473 , TYR B:474
BINDING SITE FOR RESIDUE NA B1667
3
AC3
SOFTWARE
PRO B:441 , ASP B:443 , ILE B:446
BINDING SITE FOR RESIDUE NA B1668
4
AC4
SOFTWARE
SER B:286 , LEU B:287 , LEU B:357
BINDING SITE FOR RESIDUE NA B1669
5
AC5
SOFTWARE
HIS B:269 , VAL B:272 , GLN B:273
BINDING SITE FOR RESIDUE NA B1670
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021518 (V341I, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021518
V
341
I
HHIP_HUMAN
Polymorphism
---
B
V
341
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (B:623-634|B:655-666)
2: EGF_2 (B:623-634|B:655-666)
3: EGF_3 (B:635-666)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
HHIP_HUMAN
623-634
655-666
2
B:623-634
B:655-666
2
EGF_2
PS01186
EGF-like domain signature 2.
HHIP_HUMAN
623-634
655-666
2
B:623-634
B:655-666
3
EGF_3
PS50026
EGF-like domain profile.
HHIP_HUMAN
635-667
1
B:635-666
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wg4a_ (A:)
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(
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Folds
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Superfamilies
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
Sonic hedgehog
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
1a
d2wg4a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wg4A00 (A:40-189)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Mouse (Mus musculus)
(3)
1a
2wg4A00
A:40-189
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_GSDH_2wg4B01 (B:226-444)
2a: PFAM_HH_signal_2wg4A01 (A:40-185)
3a: PFAM_Folate_rec_2wg4B02 (B:215-220)
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Clans
(
)
(
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Families
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)
(
)
Organisms
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)
(
)
Clan
:
Beta_propeller
(192)
Family
:
GSDH
(5)
Homo sapiens (Human)
(4)
1a
GSDH-2wg4B01
B:226-444
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Mus musculus (Mouse)
(3)
2a
HH_signal-2wg4A01
A:40-185
Clan
:
no clan defined [family: Folate_rec]
(4)
Family
:
Folate_rec
(4)
Homo sapiens (Human)
(4)
3a
Folate_rec-2wg4B02
B:215-220
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Asymmetric Unit 1
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Asym.Unit (197 KB)
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