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2WG3
Biol. Unit 1
Info
Asym.Unit (188 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING PROTEIN HIP AND DESERT HEDGEHOG WITHOUT CALCIUM
Authors
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C.
Date
:
15 Apr 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Lipoprotein, Development, Membrane, Secreted, Protease, Palmitate, Hydrolase, Developmental Protein, Autocatalytic Cleavage, Signal Transduction, Egf-Like Domain, Disease Mutation, Hedgehog Signaling, Glycoprotein, Cell Membrane, Disulfide Bond, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Structural Insights Into Hedgehog Ligand Sequestration By The Human Hedgehog-Interacting Protein Hip
Nat. Struct. Mol. Biol. V. 16 698 2009
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:141 , ASP A:148 , HIS A:183 , ASP C:383
BINDING SITE FOR RESIDUE ZN A1199
2
AC3
SOFTWARE
HIS C:315 , HIS C:349 , ARG C:350 , HOH C:2038
BINDING SITE FOR RESIDUE PO4 C1640
3
AC5
SOFTWARE
LYS C:294 , LYS C:295 , PRO D:361 , ARG D:439 , ASN D:447 , LYS D:470
BINDING SITE FOR RESIDUE NAG D1640
4
AC6
SOFTWARE
SER C:411 , ASN C:447 , ILE C:468 , ILE C:469 , TYR C:474 , GLU D:475 , SER D:476
BINDING SITE FOR RESIDUE NAG C1641
5
AC7
SOFTWARE
ARG C:434 , VAL C:496
BINDING SITE FOR RESIDUE CL C1642
6
AC9
SOFTWARE
GLU A:72
BINDING SITE FOR RESIDUE CL A1200
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_054873 (L162P, chain A, )
2: VAR_021518 (V341I, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054873
L
162
P
DHH_HUMAN
Disease (GDXYM)
---
A
L
162
P
2
UniProt
VAR_021518
V
341
I
HHIP_HUMAN
Polymorphism
---
C
V
341
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (C:623-634)
2: EGF_2 (C:623-634)
3: EGF_3 (C:635-639)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
HHIP_HUMAN
623-634
655-666
1
C:623-634
-
-
2
EGF_2
PS01186
EGF-like domain signature 2.
HHIP_HUMAN
623-634
655-666
1
C:623-634
-
-
3
EGF_3
PS50026
EGF-like domain profile.
HHIP_HUMAN
635-667
1
C:635-639
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2wg3a_ (A:)
1b: SCOP_d2wg3b_ (B:)
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Classes
(
)
(
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Folds
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)
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)
(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2wg3a_
A:
1b
d2wg3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wg3A00 (A:39-198)
1b: CATH_2wg3B00 (B:39-192)
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Human (Homo sapiens)
(4)
1a
2wg3A00
A:39-198
1b
2wg3B00
B:39-192
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Pfam Domains
(4, 7)
Info
all PFAM domains
1a: PFAM_GSDH_2wg3D01 (D:226-444)
1b: PFAM_GSDH_2wg3D02 (D:226-444)
2a: PFAM_Hint_2wg3B01 (B:188-192)
3a: PFAM_HH_signal_2wg3B02 (B:40-185)
3b: PFAM_HH_signal_2wg3B03 (B:40-185)
4a: PFAM_Folate_rec_2wg3D03 (D:215-220)
4b: PFAM_Folate_rec_2wg3D04 (D:215-220)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
GSDH
(5)
Homo sapiens (Human)
(4)
1a
GSDH-2wg3D01
D:226-444
1b
GSDH-2wg3D02
D:226-444
Clan
:
H-int
(15)
Family
:
Hint
(8)
Homo sapiens (Human)
(7)
2a
Hint-2wg3B01
B:188-192
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Homo sapiens (Human)
(13)
3a
HH_signal-2wg3B02
B:40-185
3b
HH_signal-2wg3B03
B:40-185
Clan
:
no clan defined [family: Folate_rec]
(4)
Family
:
Folate_rec
(4)
Homo sapiens (Human)
(4)
4a
Folate_rec-2wg3D03
D:215-220
4b
Folate_rec-2wg3D04
D:215-220
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (188 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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