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2WG0
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
AGED CONJUGATE OF TORPEDO CALIFORNICA ACETYLCHOLINESTERASE WITH SOMAN (OBTAINED BY IN CRYSTALLO AGING)
Authors
:
B. Sanson, F. Nachon, J. P. Colletier, M. T. Froment, L. Toker, H. M. Greenblatt, J. L. Sussman, Y. Ashani, P. Masson, I. Silman, M. Weik
Date
:
15 Apr 09 (Deposition) - 11 Aug 09 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Soman, Aging, Synapse, Membrane, Hydrolase, Cell Membrane, Disulfide Bond, Serine Esterase, Neurotransmitter Cleavage, Conformational Flexibility, Neurotransmitter Degradation, Alpha/Beta Hydrolase, Alternative Splicing, Organophosphate, Synapse Membrane, Alzheimer Disease, Gpi-Anchor, Lipoprotein, Glycoprotein, Cell Junction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Sanson, F. Nachon, J. P. Colletier, M. T. Froment, L. Toker, H. M. Greenblatt, J. L. Sussman, Y. Ashani, P. Masson, I. Silman, M. Weik
Crystallographic Snapshots Of Nonaged And Aged Conjugates Of Soman With Acetylcholinesterase, And Of A Ternary Complex Of The Aged Conjugate With Pralidoxime.
J. Med. Chem. V. 52 7593 2009
[
close entry info
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Hetero Components
(7, 22)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: METHYLPHOSPHONIC ACID ESTER GROUP (GBa)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
5b: DI(HYDROXYETHYL)ETHER (PEGb)
5c: DI(HYDROXYETHYL)ETHER (PEGc)
5d: DI(HYDROXYETHYL)ETHER (PEGd)
5e: DI(HYDROXYETHYL)ETHER (PEGe)
5f: DI(HYDROXYETHYL)ETHER (PEGf)
5g: DI(HYDROXYETHYL)ETHER (PEGg)
5h: DI(HYDROXYETHYL)ETHER (PEGh)
5i: DI(HYDROXYETHYL)ETHER (PEGi)
5j: DI(HYDROXYETHYL)ETHER (PEGj)
6a: TETRAETHYLENE GLYCOL (PG4a)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
7d: TRIETHYLENE GLYCOL (PGEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GB
1
Ligand/Ion
METHYLPHOSPHONIC ACID ESTER GROUP
3
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PEG
10
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:457 , HOH A:1586 , HOH A:1587
BINDING SITE FOR RESIDUE NAG A2536
02
AC2
SOFTWARE
HOH A:1620 , NAG A:2537
BINDING SITE FOR RESIDUE NAG A2557
03
AC3
SOFTWARE
ASN A:416 , HOH A:1588 , HOH A:1590 , HOH A:1591 , HOH A:1592 , HOH A:1593 , NAG A:2557
BINDING SITE FOR RESIDUE NAG A2537
04
AC4
SOFTWARE
ASN A:59 , SER A:61 , HOH A:1594 , HOH A:1595 , HOH A:1596 , HOH A:1597
BINDING SITE FOR RESIDUE NAG A2538
05
AC5
SOFTWARE
LYS A:133 , TYR A:134 , HOH A:1494
BINDING SITE FOR RESIDUE CL A2539
06
AC6
SOFTWARE
GLY A:118 , GLY A:119 , SER A:200 , ALA A:201 , PHE A:288 , PHE A:290 , HIS A:440 , PEG A:2549
BINDING SITE FOR RESIDUE GB A2540
07
AC7
SOFTWARE
ASN A:9 , THR A:10 , LYS A:11 , ARG A:243 , GLU A:247 , ASN A:280 , VAL A:281 , LEU A:282 , PRO A:283 , HOH A:1600
BINDING SITE FOR RESIDUE MES A2541
08
AC8
SOFTWARE
TYR A:121 , PHE A:330 , TYR A:334 , HOH A:1602 , PEG A:2549
BINDING SITE FOR RESIDUE PG4 A2542
09
AC9
SOFTWARE
ILE A:296 , ASP A:297 , HOH A:1114 , HOH A:1603 , HOH A:1605
BINDING SITE FOR RESIDUE PGE A2543
10
BC1
SOFTWARE
SER A:4 , GLU A:5 , ARG A:105 , ARG A:250 , ASN A:251 , ASN A:253 , HOH A:1149 , PEG A:2550
BINDING SITE FOR RESIDUE PGE A2544
11
BC2
SOFTWARE
GLU A:499 , LYS A:501 , VAL A:512 , GLN A:514
BINDING SITE FOR RESIDUE PGE A2545
12
BC3
SOFTWARE
LYS A:11 , TRP A:54 , PHE A:284 , HOH A:1610
BINDING SITE FOR RESIDUE PGE A2546
13
BC4
SOFTWARE
THR A:138 , ARG A:467 , ARG A:468 , HOH A:1189
BINDING SITE FOR RESIDUE PEG A2547
14
BC5
SOFTWARE
ARG A:242 , VAL A:246 , LEU A:256 , ASN A:257 , SER A:258 , ASP A:259 , HOH A:1611
BINDING SITE FOR RESIDUE PEG A2548
15
BC6
SOFTWARE
TRP A:84 , GLY A:117 , GLY A:118 , GLU A:199 , PHE A:330 , HOH A:1612 , HOH A:1613 , GB A:2540 , PG4 A:2542
BINDING SITE FOR RESIDUE PEG A2549
16
BC7
SOFTWARE
VAL A:8 , ASN A:9 , ARG A:105 , PHE A:186 , ASN A:251 , ASN A:280 , HOH A:1149 , HOH A:1150 , HOH A:1151 , PGE A:2544
BINDING SITE FOR RESIDUE PEG A2550
17
BC8
SOFTWARE
MET A:405 , HIS A:406 , ASN A:409 , ARG A:515 , LEU A:516 , VAL A:518 , ASN A:525 , GLN A:526 , HOH A:1546 , HOH A:1575
BINDING SITE FOR RESIDUE PEG A2551
18
BC9
SOFTWARE
VAL A:20 , TYR A:63 , ARG A:88 , TRP A:100 , ASN A:131 , LYS A:133 , HOH A:1074 , HOH A:1614
BINDING SITE FOR RESIDUE PEG A2552
19
CC1
SOFTWARE
THR A:376
BINDING SITE FOR RESIDUE PEG A2553
20
CC2
SOFTWARE
SER A:55 , VAL A:57 , TRP A:58
BINDING SITE FOR RESIDUE PEG A2554
21
CC3
SOFTWARE
SER A:79 , GLY A:80 , MET A:83 , ASN A:429 , LEU A:430 , VAL A:431 , TYR A:442 , HOH A:1489 , HOH A:1490
BINDING SITE FOR RESIDUE PEG A2555
22
CC4
SOFTWARE
ASP A:326 , ASP A:389 , GLU A:434 , TRP A:435 , HOH A:1617 , HOH A:1618 , HOH A:1619
BINDING SITE FOR RESIDUE PEG A2556
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:92-102)
2: CARBOXYLESTERASE_B_1 (A:187-202)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
ACES_TETCF
113-123
1
A:92-102
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
ACES_TETCF
208-223
1
A:187-202
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wg0a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Acetylcholinesterase
(107)
Pacific electric ray (Torpedo californica) [TaxId: 7787]
(75)
1a
d2wg0a_
A:
[
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wg0A00 (A:4-535)
View:
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pacific electric ray (Torpedo californica)
(75)
1a
2wg0A00
A:4-535
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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