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2WFZ
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
NON-AGED CONJUGATE OF TORPEDO CALIFORNICA ACETYLCHOLINESTERASE WITH SOMAN
Authors
:
B. Sanson, F. Nachon, J. P. Colletier, M. T. Froment, L. Toker, H. M. Greenblatt, J. L. Sussman, Y. Ashani, P. Masson, I. Silman, M. Weik
Date
:
15 Apr 09 (Deposition) - 11 Aug 09 (Release) - 11 May 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Soman, Aging, Synapse, Membrane, Hydrolase, Cell Membrane, Disulfide Bond, Serine Esterase, Neurotransmitter Cleavage, Conformational Flexibility, Neurotransmitter Degradation, Alpha/Beta Hydrolase, Alternative Splicing, Organophosphate, Synapse Membrane, Alzheimer Disease, Gpi-Anchor, Lipoprotein, Glycoprotein, Cell Junction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Sanson, F. Nachon, J. P. Colletier, M. T. Froment, L. Toker, H. M. Greenblatt, J. L. Sussman, Y. Ashani, P. Masson, I. Silman, M. Weik
Crystallographic Snapshots Of Nonaged And Aged Conjugates Of Soman With Acetylcholinesterase, And Of A Ternary Complex Of The Aged Conjugate With Pralidoxime.
J. Med. Chem. V. 52 7593 2009
[
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Hetero Components
(7, 14)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: (1R)-1,2,2-TRIMETHYLPROPYL (S)-MET... (GD8a)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: DI(HYDROXYETHYL)ETHER (PEGa)
6a: TETRAETHYLENE GLYCOL (PG4a)
6b: TETRAETHYLENE GLYCOL (PG4b)
6c: TETRAETHYLENE GLYCOL (PG4c)
6d: TETRAETHYLENE GLYCOL (PG4d)
6e: TETRAETHYLENE GLYCOL (PG4e)
7a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
7b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GD8
1
Ligand/Ion
(1R)-1,2,2-TRIMETHYLPROPYL (S)-METHYLPHOSPHINATE
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
6
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
7
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:84 , GLY A:117 , GLY A:118 , GLY A:119 , GLU A:199 , SER A:200 , ALA A:201 , PHE A:331 , HIS A:440 , PG4 A:2546
BINDING SITE FOR RESIDUE GD8 A2539
02
AC2
SOFTWARE
GLN A:178 , ASP A:217 , LEU A:218 , LEU A:333 , ALA A:336 , PHE A:339 , HOH A:1643 , HOH A:1644 , HOH A:1645 , HOH A:1646
BINDING SITE FOR RESIDUE TRS A2540
03
AC3
SOFTWARE
LYS A:454 , TYR A:458 , THR A:459 , ALA A:460 , GLU A:463
BINDING SITE FOR RESIDUE TRS A2541
04
AC4
SOFTWARE
GLU A:5 , LYS A:107 , GLU A:247 , ARG A:250 , ASN A:251 , ASN A:253 , HOH A:1647 , HOH A:1648 , HOH A:1649 , HOH A:1650 , PG4 A:2543
BINDING SITE FOR RESIDUE PG4 A2542
05
AC5
SOFTWARE
ASN A:9 , LYS A:11 , PHE A:186 , PRO A:283 , PHE A:284 , ASP A:285 , HOH A:1651 , PG4 A:2542
BINDING SITE FOR RESIDUE PG4 A2543
06
AC6
SOFTWARE
ILE A:296 , HOH A:1652 , HOH A:1654
BINDING SITE FOR RESIDUE PG4 A2544
07
AC7
SOFTWARE
PHE A:422 , ASP A:504 , HIS A:513 , LEU A:516 , ARG A:517 , HOH A:1656 , HOH A:1657 , HOH A:1658
BINDING SITE FOR RESIDUE PG4 A2545
08
AC8
SOFTWARE
TYR A:121 , GLN A:185 , PHE A:330 , TYR A:334 , HOH A:1659 , HOH A:1660 , GD8 A:2539
BINDING SITE FOR RESIDUE PG4 A2546
09
AC9
SOFTWARE
ASN A:59 , FUC A:2538
BINDING SITE FOR RESIDUE PEG A2547
10
BC1
SOFTWARE
ASN A:59 , SER A:61 , HOH A:1639 , HOH A:1640 , PEG A:2547
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 59 RESIDUES 2537 TO 2538
11
BC2
SOFTWARE
ASN A:416 , HOH A:1633 , HOH A:1634 , HOH A:1635 , HOH A:1636 , HOH A:1637 , HOH A:1638
BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 416 RESIDUES 2535 TO 2536
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:92-102)
2: CARBOXYLESTERASE_B_1 (A:187-202)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
ACES_TETCF
113-123
1
A:92-102
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
ACES_TETCF
208-223
1
A:187-202
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wfza_ (A:)
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Classes
(
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(
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Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
Acetylcholinesterase
(107)
Pacific electric ray (Torpedo californica) [TaxId: 7787]
(75)
1a
d2wfza_
A:
[
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]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wfzA00 (A:4-535)
View:
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(
)
(
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Architectures
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pacific electric ray (Torpedo californica)
(75)
1a
2wfzA00
A:4-535
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (115 KB)
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