PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2WFX
Asym. Unit
Info
Asym.Unit (199 KB)
Biol.Unit 1 (192 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN HUMAN HEDGEHOG-INTERACTING PROTEIN HIP AND SONIC HEDGEHOG IN THE PRESENCE OF CALCIUM
Authors
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Date
:
15 Apr 09 (Deposition) - 30 Jun 09 (Release) - 21 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Signaling Protein, Autocatalytic Cleavage, Protease, Membrane, Secreted, Palmitate, Hydrolase, Signal Transduction, Developmental Protein, Lipoprotein, Development, Glycoprotein, Cell Membrane, Disulfide Bond, Egf-Like Domain, Hedgehog Signaling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Structural Insights Into Hedgehog Ligand Sequestration By The Human Hedgehog-Interacting Protein Hip
Nat. Struct. Mol. Biol. V. 16 698 2009
[
close entry info
]
Hetero Components
(3, 7)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
NA
3
Ligand/Ion
SODIUM ION
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:141 , ASP A:148 , HIS A:183 , ASP B:383
BINDING SITE FOR RESIDUE ZN A1192
2
AC2
SOFTWARE
GLU A:90 , GLU A:91 , ASP A:96 , THR A:126 , GLU A:127
BINDING SITE FOR RESIDUE CA A1193
3
AC3
SOFTWARE
GLU A:91 , GLU A:127 , ASP A:130
BINDING SITE FOR RESIDUE CA A1194
4
AC4
SOFTWARE
CYS B:623 , GLY B:631
BINDING SITE FOR RESIDUE NA B1667
5
AC5
SOFTWARE
ARG B:410 , ASN B:412 , ASP B:473 , TYR B:474 , GLU B:475
BINDING SITE FOR RESIDUE NA B1668
6
AC6
SOFTWARE
PRO B:441 , ASP B:443 , ILE B:446
BINDING SITE FOR RESIDUE NA B1669
7
AC7
SOFTWARE
GLY B:354
BINDING SITE FOR RESIDUE CA B1670
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021518 (V341I, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021518
V
341
I
HHIP_HUMAN
Polymorphism
---
B
V
341
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (B:623-634|B:655-666)
2: EGF_2 (B:623-634|B:655-666)
3: EGF_3 (B:635-667)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
HHIP_HUMAN
623-634
655-666
2
B:623-634
B:655-666
2
EGF_2
PS01186
EGF-like domain signature 2.
HHIP_HUMAN
623-634
655-666
2
B:623-634
B:655-666
3
EGF_3
PS50026
EGF-like domain profile.
HHIP_HUMAN
635-667
1
B:635-667
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wfxA00 (A:40-191)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Mouse (Mus musculus)
(3)
1a
2wfxA00
A:40-191
[
close CATH info
]
Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_GSDH_2wfxB01 (B:226-444)
2a: PFAM_Hint_2wfxA01 (A:188-191)
3a: PFAM_HH_signal_2wfxA02 (A:40-185)
4a: PFAM_Folate_rec_2wfxB02 (B:215-220)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
GSDH
(5)
Homo sapiens (Human)
(4)
1a
GSDH-2wfxB01
B:226-444
Clan
:
H-int
(15)
Family
:
Hint
(8)
Mus musculus (Mouse)
(1)
2a
Hint-2wfxA01
A:188-191
Clan
:
Peptidase_MD
(20)
Family
:
HH_signal
(16)
Mus musculus (Mouse)
(3)
3a
HH_signal-2wfxA02
A:40-185
Clan
:
no clan defined [family: Folate_rec]
(4)
Family
:
Folate_rec
(4)
Homo sapiens (Human)
(4)
4a
Folate_rec-2wfxB02
B:215-220
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (199 KB)
Header - Asym.Unit
Biol.Unit 1 (192 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2WFX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
