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2WFR
Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N-TERMINAL SIGNALLING DOMAIN OF HUMAN DHH WITH CALCIUM
Authors
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C.
Date
:
14 Apr 09 (Deposition) - 30 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipoprotein, Development, Cell Membrane, Autocatalytic Cleavage, Signaling Protein, Disease Mutation, Hedgehog Signalling, Protease, Membrane, Secreted, Palmitate, Hydrolase, Signal Transduction, Developmental Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Bishop, A. R. Aricescu, K. Harlos, C. A. O'Callaghan, E. Y. Jones, C. Siebold
Structural Insights Into Hedgehog Ligand Sequestration By The Human Hedgehog-Interacting Protein Hip
Nat. Struct. Mol. Biol. V. 16 698 2009
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
SO4
2
Ligand/Ion
SULFATE ION
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:141 , ASP A:148 , HIS A:183 , HIS A:203
BINDING SITE FOR RESIDUE ZN A1204
2
AC2
SOFTWARE
GLU A:90 , GLU A:91 , ASP A:96 , THR A:126 , GLU A:127
BINDING SITE FOR RESIDUE CA A1205
3
AC3
SOFTWARE
GLU A:91 , GLU A:127 , ASP A:130
BINDING SITE FOR RESIDUE CA A1206
4
AC4
SOFTWARE
LYS A:88 , ARG A:124 , GLN A:137 , ARG A:154 , HOH A:2073
BINDING SITE FOR RESIDUE SO4 A1207
5
AC5
SOFTWARE
LEU A:44 , TYR A:45 , ARG A:179 , HOH A:2096
BINDING SITE FOR RESIDUE SO4 A1208
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054873 (L162P, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054873
L
162
P
DHH_HUMAN
Disease (GDXYM)
---
A
L
162
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wfra_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hedgehog/DD-peptidase
(29)
Superfamily
:
Hedgehog/DD-peptidase
(29)
Family
:
Hedgehog (development protein), N-terminal signaling domain
(23)
Protein domain
:
automated matches
(18)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2wfra_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wfrA00 (A:39-203)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Muramoyl-pentapeptide Carboxypeptidase; domain 2
(24)
Homologous Superfamily
:
[code=3.30.1380.10, no name defined]
(13)
Human (Homo sapiens)
(4)
1a
2wfrA00
A:39-203
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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