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2WF9
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (79 KB)
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(1)
Title
:
STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6-PHOSPHATE, AND BERYLLIUM TRIFLUORIDE, CRYSTAL FORM 2
Authors
:
M. W. Bowler, N. J. Baxter, C. E. Webster, S. Pollard, T. Alizadeh, A. M. H M. J. Cliff, W. Bermel, N. H. Williams, F. Hollfelder, G. M. Blackburn, J. P. Waltho
Date
:
03 Apr 09 (Deposition) - 26 May 10 (Release) - 16 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ground State Analogue, Transition State Analogue, Isomerase, Phosphotransferase, Haloacid Dehalogenase Superfamily
(Keyword Search:
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Reference
:
J. L. Griffin, M. W. Bowler, N. J. Baxter, K. N. Leigh, H. R. Dannatt, A. M. Hounslow, G. M. Blackburn, C. E. Webster, M. J. Cliff, J. P. Waltho
Near Attack Conformers Dominate Beta-Phosphoglucomutase Complexes Where Geometry And Charge Distribution Reflect Those Of Substrate.
Proc. Natl. Acad. Sci. Usa V. 109 6910 2012
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: BERYLLIUM TRIFLUORIDE ION (BEFa)
2a: BETA-D-GLUCOSE-6-PHOSPHATE (BG6a)
3a: ALPHA-D-GLUCOSE-6-PHOSPHATE (G6Pa)
4a: MAGNESIUM ION (MGa)
5a: SODIUM ION (NAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BEF
1
Ligand/Ion
BERYLLIUM TRIFLUORIDE ION
2
BG6
1
Ligand/Ion
BETA-D-GLUCOSE-6-PHOSPHATE
3
G6P
1
Ligand/Ion
ALPHA-D-GLUCOSE-6-PHOSPHATE
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NA
1
Ligand/Ion
SODIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:8 , ASP A:10 , ASP A:170 , BEF A:1225 , HOH A:2006 , HOH A:2195
BINDING SITE FOR RESIDUE MG A1222
2
AC2
SOFTWARE
HOH A:2027 , HOH A:2107 , HOH A:2110 , HOH A:2114 , HOH A:2116
BINDING SITE FOR RESIDUE NA A1226
3
AC3
SOFTWARE
ASP A:10 , HIS A:20 , LEU A:44 , GLY A:46 , VAL A:47 , ARG A:49 , ALA A:115 , SER A:116 , LYS A:117 , ASN A:118 , BEF A:1225 , HOH A:2147 , HOH A:2254 , HOH A:2255 , HOH A:2256
BINDING SITE FOR RESIDUE G6P A1223
4
AC4
SOFTWARE
ASP A:10 , HIS A:20 , LEU A:44 , GLY A:46 , VAL A:47 , ARG A:49 , ALA A:115 , SER A:116 , LYS A:117 , ASN A:118 , BEF A:1225 , HOH A:2147 , HOH A:2254 , HOH A:2255 , HOH A:2256
BINDING SITE FOR RESIDUE BG6 A1224
5
AC5
SOFTWARE
ASP A:8 , LEU A:9 , ASP A:10 , SER A:114 , ALA A:115 , LYS A:145 , MG A:1222 , G6P A:1223 , BG6 A:1224 , HOH A:2006 , HOH A:2055 , HOH A:2195
BINDING SITE FOR RESIDUE BEF A1225
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2wf9a_ (A:)
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)
Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
beta-Phosphoglucomutase-like
(27)
Protein domain
:
beta-Phosphoglucomutase
(15)
Lactococcus lactis [TaxId: 1358]
(14)
1a
d2wf9a_
A:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2wf9A01 (A:1-14,A:93-221)
2a: CATH_2wf9A02 (A:15-92)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Lactococcus lactis. Organism_taxid: 1358. Strain: 19435.
(7)
1a
2wf9A01
A:1-14,A:93-221
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Putative phosphatase; domain 2
(65)
Lactococcus lactis. Organism_taxid: 1358. Strain: 19435.
(7)
2a
2wf9A02
A:15-92
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hydrolase_2wf9A01 (A:2-182)
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Clan
:
HAD
(186)
Family
:
Hydrolase
(64)
Lactococcus lactis subsp. lactis (Streptococcus lactis)
(13)
1a
Hydrolase-2wf9A01
A:2-182
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Asymmetric Unit 1
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