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2WD6
Biol. Unit 2
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Asym.Unit (107 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE VARIABLE DOMAIN OF THE STREPTOCOCCUS GORDONII SURFACE PROTEIN SSPB
Authors
:
N. Forsgren, K. Persson
Date
:
20 Mar 09 (Deposition) - 28 Jul 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Cell Adhesion, Secreted, V-Region, Cell Wall, Ag I/Ii Protein, Surface Adhesin, Peptidoglycan-Anchor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Forsgren, R. J. Lamont, K. Persson
Crystal Structure Of The Variable Domain Of The Streptococcus Gordonii Surface Protein Sspb.
Protein Sci. V. 18 1896 2009
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: POTASSIUM ION (Ka)
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No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:711 , THR A:712 , THR B:711 , THR B:712
BINDING SITE FOR RESIDUE K B1762
2
AC3
SOFTWARE
SER B:648 , ASN B:650 , GLU B:664 , HOH B:2054 , HOH B:2057 , HOH B:2098
BINDING SITE FOR RESIDUE CA B1763
3
AC4
SOFTWARE
SER A:541 , TYR A:542 , ALA A:545 , TRP B:704 , ASN B:716 , GOL B:1765
BINDING SITE FOR RESIDUE GOL B1764
4
AC5
SOFTWARE
TRP A:704 , ASN A:716 , GOL A:1767 , ALA B:545
BINDING SITE FOR RESIDUE GOL A1766
5
AC6
SOFTWARE
TYR A:542 , TRP A:613 , ASN A:742 , GLU B:708 , SER B:714 , PRO B:715 , GOL B:1764 , HOH B:2085
BINDING SITE FOR RESIDUE GOL B1765
6
AC7
SOFTWARE
GLU A:708 , SER A:714 , GOL A:1766 , TYR B:542 , TRP B:613 , ASN B:742
BINDING SITE FOR RESIDUE GOL A1767
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GbpC_2wd6B01 (B:477-748)
1b: PFAM_GbpC_2wd6B02 (B:477-748)
2a: PFAM_Strep_SA_rep_2wd6B03 (B:468-470)
2b: PFAM_Strep_SA_rep_2wd6B04 (B:468-470)
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Clans
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(
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: GbpC]
(1)
Family
:
GbpC
(1)
Streptococcus gordonii
(1)
1a
GbpC-2wd6B01
B:477-748
1b
GbpC-2wd6B02
B:477-748
Clan
:
no clan defined [family: Strep_SA_rep]
(1)
Family
:
Strep_SA_rep
(1)
Streptococcus gordonii
(1)
2a
Strep_SA_rep-2wd6B03
B:468-470
2b
Strep_SA_rep-2wd6B04
B:468-470
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Chain B
Asymmetric Unit 1
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Asym.Unit (107 KB)
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