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2WCV
Biol. Unit 2
Info
Asym.Unit (231 KB)
Biol.Unit 1 (225 KB)
Biol.Unit 2 (227 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACTERIAL FUCU
Authors
:
K. -H. Lee, M. -S. Kim, H. -Y. Suh, B. Ku, Y. -L. Song, B. -H. Oh
Date
:
17 Mar 09 (Deposition) - 10 Nov 09 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: F,G,H,I,J (2x)
Keywords
:
Ribose, Pyranase, Isomerase, Fucose Metabolism
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. -H. Lee, K. -S. Ryu, M. -S. Kim, H. -Y. Suh, B. Ku, Y. -L. Song, S. Ko, W. Lee, B. -H. Oh
Crystal Structures And Enzyme Mechanism Of A Dual Fucose Mutarotase/Ribose Pyranase
J. Mol. Biol. V. 391 178 2009
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
1e: ALPHA-L-FUCOSE (FUCe)
1f: ALPHA-L-FUCOSE (FUCf)
1g: ALPHA-L-FUCOSE (FUCg)
1h: ALPHA-L-FUCOSE (FUCh)
1i: ALPHA-L-FUCOSE (FUCi)
1j: ALPHA-L-FUCOSE (FUCj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
10
Ligand/Ion
ALPHA-L-FUCOSE
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Sites
(5, 5)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ASP F:30 , HIS F:32 , PHE F:33 , MET F:73 , TYR F:111 , LYS F:128 , TYR F:129 , ASN F:131 , HIS J:22 , VAL J:138
BINDING SITE FOR RESIDUE FUC F1141
2
AC7
SOFTWARE
HIS F:22 , TYR F:66 , VAL F:138 , ASP G:30 , HIS G:32 , PHE G:33 , MET G:73 , TYR G:111 , LYS G:128 , TYR G:129 , ASN G:131
BINDING SITE FOR RESIDUE FUC G1141
3
AC8
SOFTWARE
HIS G:22 , VAL G:138 , ASP H:30 , HIS H:32 , PHE H:33 , MET H:73 , TYR H:111 , LYS H:128 , TYR H:129 , ASN H:131
BINDING SITE FOR RESIDUE FUC H1141
4
AC9
SOFTWARE
HIS H:22 , VAL H:138 , ASP I:30 , HIS I:32 , PHE I:33 , MET I:73 , ARG I:107 , TYR I:111 , LYS I:128 , TYR I:129 , ASN I:131
BINDING SITE FOR RESIDUE FUC I1141
5
BC1
SOFTWARE
HIS I:22 , VAL I:138 , ASP J:30 , HIS J:32 , PHE J:33 , MET J:73 , ARG J:107 , TYR J:111 , LYS J:128 , TYR J:129 , ASN J:131
BINDING SITE FOR RESIDUE FUC J1141
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2wcva_ (A:)
1b: SCOP_d2wcvb_ (B:)
1c: SCOP_d2wcvc_ (C:)
1d: SCOP_d2wcvd_ (D:)
1e: SCOP_d2wcve_ (E:)
1f: SCOP_d2wcvf_ (F:)
1g: SCOP_d2wcvg_ (G:)
1h: SCOP_d2wcvh_ (H:)
1i: SCOP_d2wcvi_ (I:)
1j: SCOP_d2wcvj_ (J:)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
RbsD-like
(12)
Superfamily
:
RbsD-like
(12)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Escherichia coli [TaxId: 562]
(1)
1a
d2wcva_
A:
1b
d2wcvb_
B:
1c
d2wcvc_
C:
1d
d2wcvd_
D:
1e
d2wcve_
E:
1f
d2wcvf_
F:
1g
d2wcvg_
G:
1h
d2wcvh_
H:
1i
d2wcvi_
I:
1j
d2wcvj_
J:
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CATH Domains
(0, 0)
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_RbsD_FucU_2wcvJ01 (J:3-140)
1b: PFAM_RbsD_FucU_2wcvJ02 (J:3-140)
1c: PFAM_RbsD_FucU_2wcvJ03 (J:3-140)
1d: PFAM_RbsD_FucU_2wcvJ04 (J:3-140)
1e: PFAM_RbsD_FucU_2wcvJ05 (J:3-140)
1f: PFAM_RbsD_FucU_2wcvJ06 (J:3-140)
1g: PFAM_RbsD_FucU_2wcvJ07 (J:3-140)
1h: PFAM_RbsD_FucU_2wcvJ08 (J:3-140)
1i: PFAM_RbsD_FucU_2wcvJ09 (J:3-140)
1j: PFAM_RbsD_FucU_2wcvJ10 (J:3-140)
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Clan
:
no clan defined [family: RbsD_FucU]
(9)
Family
:
RbsD_FucU
(9)
Escherichia coli (strain K12)
(1)
1a
RbsD_FucU-2wcvJ01
J:3-140
1b
RbsD_FucU-2wcvJ02
J:3-140
1c
RbsD_FucU-2wcvJ03
J:3-140
1d
RbsD_FucU-2wcvJ04
J:3-140
1e
RbsD_FucU-2wcvJ05
J:3-140
1f
RbsD_FucU-2wcvJ06
J:3-140
1g
RbsD_FucU-2wcvJ07
J:3-140
1h
RbsD_FucU-2wcvJ08
J:3-140
1i
RbsD_FucU-2wcvJ09
J:3-140
1j
RbsD_FucU-2wcvJ10
J:3-140
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Asym.Unit (231 KB)
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