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Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (225 KB)
Biol.Unit 2 (227 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACTERIAL FUCU
Authors
:
K. -H. Lee, M. -S. Kim, H. -Y. Suh, B. Ku, Y. -L. Song, B. -H. Oh
Date
:
17 Mar 09 (Deposition) - 10 Nov 09 (Release) - 26 Jan 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (2x)
Biol. Unit 2: F,G,H,I,J (2x)
Keywords
:
Ribose, Pyranase, Isomerase, Fucose Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. -H. Lee, K. -S. Ryu, M. -S. Kim, H. -Y. Suh, B. Ku, Y. -L. Song, S. Ko, W. Lee, B. -H. Oh
Crystal Structures And Enzyme Mechanism Of A Dual Fucose Mutarotase/Ribose Pyranase
J. Mol. Biol. V. 391 178 2009
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: ALPHA-L-FUCOSE (FUCa)
1b: ALPHA-L-FUCOSE (FUCb)
1c: ALPHA-L-FUCOSE (FUCc)
1d: ALPHA-L-FUCOSE (FUCd)
1e: ALPHA-L-FUCOSE (FUCe)
1f: ALPHA-L-FUCOSE (FUCf)
1g: ALPHA-L-FUCOSE (FUCg)
1h: ALPHA-L-FUCOSE (FUCh)
1i: ALPHA-L-FUCOSE (FUCi)
1j: ALPHA-L-FUCOSE (FUCj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FUC
10
Ligand/Ion
ALPHA-L-FUCOSE
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:30 , HIS A:32 , PHE A:33 , MET A:73 , TYR A:111 , TYR A:129 , ASN A:131 , HIS E:22 , VAL E:138
BINDING SITE FOR RESIDUE FUC A1141
02
AC2
SOFTWARE
HIS A:22 , TYR A:66 , VAL A:138 , ASP B:30 , HIS B:32 , PHE B:33 , MET B:73 , TYR B:111 , LYS B:128 , TYR B:129 , ASN B:131
BINDING SITE FOR RESIDUE FUC B1141
03
AC3
SOFTWARE
HIS B:22 , ASP C:30 , HIS C:32 , PHE C:33 , MET C:73 , TYR C:111 , LYS C:128 , TYR C:129 , ASN C:131
BINDING SITE FOR RESIDUE FUC C1141
04
AC4
SOFTWARE
HIS C:22 , VAL C:138 , ASP D:30 , HIS D:32 , PHE D:33 , MET D:73 , TYR D:111 , LYS D:128 , TYR D:129 , ASN D:131
BINDING SITE FOR RESIDUE FUC D1141
05
AC5
SOFTWARE
HIS D:22 , TYR D:66 , VAL D:138 , ASP E:30 , PHE E:33 , MET E:73 , TYR E:111 , LYS E:128 , TYR E:129 , ASN E:131
BINDING SITE FOR RESIDUE FUC E1141
06
AC6
SOFTWARE
ASP F:30 , HIS F:32 , PHE F:33 , MET F:73 , TYR F:111 , LYS F:128 , TYR F:129 , ASN F:131 , HIS J:22 , VAL J:138
BINDING SITE FOR RESIDUE FUC F1141
07
AC7
SOFTWARE
HIS F:22 , TYR F:66 , VAL F:138 , ASP G:30 , HIS G:32 , PHE G:33 , MET G:73 , TYR G:111 , LYS G:128 , TYR G:129 , ASN G:131
BINDING SITE FOR RESIDUE FUC G1141
08
AC8
SOFTWARE
HIS G:22 , VAL G:138 , ASP H:30 , HIS H:32 , PHE H:33 , MET H:73 , TYR H:111 , LYS H:128 , TYR H:129 , ASN H:131
BINDING SITE FOR RESIDUE FUC H1141
09
AC9
SOFTWARE
HIS H:22 , VAL H:138 , ASP I:30 , HIS I:32 , PHE I:33 , MET I:73 , ARG I:107 , TYR I:111 , LYS I:128 , TYR I:129 , ASN I:131
BINDING SITE FOR RESIDUE FUC I1141
10
BC1
SOFTWARE
HIS I:22 , VAL I:138 , ASP J:30 , HIS J:32 , PHE J:33 , MET J:73 , ARG J:107 , TYR J:111 , LYS J:128 , TYR J:129 , ASN J:131
BINDING SITE FOR RESIDUE FUC J1141
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d2wcva_ (A:)
1b: SCOP_d2wcvb_ (B:)
1c: SCOP_d2wcvc_ (C:)
1d: SCOP_d2wcvd_ (D:)
1e: SCOP_d2wcve_ (E:)
1f: SCOP_d2wcvf_ (F:)
1g: SCOP_d2wcvg_ (G:)
1h: SCOP_d2wcvh_ (H:)
1i: SCOP_d2wcvi_ (I:)
1j: SCOP_d2wcvj_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
RbsD-like
(12)
Superfamily
:
RbsD-like
(12)
Family
:
automated matches
(7)
Protein domain
:
automated matches
(7)
Escherichia coli [TaxId: 562]
(1)
1a
d2wcva_
A:
1b
d2wcvb_
B:
1c
d2wcvc_
C:
1d
d2wcvd_
D:
1e
d2wcve_
E:
1f
d2wcvf_
F:
1g
d2wcvg_
G:
1h
d2wcvh_
H:
1i
d2wcvi_
I:
1j
d2wcvj_
J:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_RbsD_FucU_2wcvJ01 (J:3-140)
1b: PFAM_RbsD_FucU_2wcvJ02 (J:3-140)
1c: PFAM_RbsD_FucU_2wcvJ03 (J:3-140)
1d: PFAM_RbsD_FucU_2wcvJ04 (J:3-140)
1e: PFAM_RbsD_FucU_2wcvJ05 (J:3-140)
1f: PFAM_RbsD_FucU_2wcvJ06 (J:3-140)
1g: PFAM_RbsD_FucU_2wcvJ07 (J:3-140)
1h: PFAM_RbsD_FucU_2wcvJ08 (J:3-140)
1i: PFAM_RbsD_FucU_2wcvJ09 (J:3-140)
1j: PFAM_RbsD_FucU_2wcvJ10 (J:3-140)
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Clans
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Clan
:
no clan defined [family: RbsD_FucU]
(9)
Family
:
RbsD_FucU
(9)
Escherichia coli (strain K12)
(1)
1a
RbsD_FucU-2wcvJ01
J:3-140
1b
RbsD_FucU-2wcvJ02
J:3-140
1c
RbsD_FucU-2wcvJ03
J:3-140
1d
RbsD_FucU-2wcvJ04
J:3-140
1e
RbsD_FucU-2wcvJ05
J:3-140
1f
RbsD_FucU-2wcvJ06
J:3-140
1g
RbsD_FucU-2wcvJ07
J:3-140
1h
RbsD_FucU-2wcvJ08
J:3-140
1i
RbsD_FucU-2wcvJ09
J:3-140
1j
RbsD_FucU-2wcvJ10
J:3-140
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Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (225 KB)
Header - Biol.Unit 1
Biol.Unit 2 (227 KB)
Header - Biol.Unit 2
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