PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2WCP
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC1-2
Authors
:
M. Sotomayor, W. Weihofen, R. Gaudet, D. P. Corey
Date
:
13 Mar 09 (Deposition) - 21 Apr 10 (Release) - 06 Jun 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cell Adhesion, Hearing, Deafness
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sotomayor, W. Weihofen, R. Gaudet, D. P. Corey
Structural Determinants Of Cadherin-23 Function In Hearing And Deafness.
Neuron V. 66 85 2010
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Hetero Components
(4, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
3
GOL
2
Ligand/Ion
GLYCEROL
4
NA
3
Ligand/Ion
SODIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:4 , ARG A:5 , ASP A:37 , ASP A:39 , ASP A:41 , ASP A:87
BINDING SITE FOR RESIDUE CA A 401
2
AC2
SOFTWARE
GLU A:22 , GLU A:74 , ASP A:102 , VAL A:103 , ASP A:105 , ASP A:138
BINDING SITE FOR RESIDUE CA A 402
3
AC3
SOFTWARE
ASN A:104 , ASN A:106 , ASP A:136 , ASP A:138 , GLY A:142 , ASP A:187
BINDING SITE FOR RESIDUE CA A 403
4
AC4
SOFTWARE
GLU A:22 , ASP A:72 , GLU A:74 , ASP A:105 , GOL A:1002 , HOH A:2141
BINDING SITE FOR RESIDUE NA A 501
5
AC5
SOFTWARE
VAL A:47 , SER A:53 , HOH A:2102 , HOH A:2105 , HOH A:2108 , HOH A:2119
BINDING SITE FOR RESIDUE NA A 502
6
AC6
SOFTWARE
ASP A:136 , GLY A:143 , HOH A:2208 , HOH A:2209 , HOH A:2211 , HOH A:2214
BINDING SITE FOR RESIDUE NA A 503
7
AC7
SOFTWARE
PHE A:9 , ILE A:92 , ASN A:122 , HOH A:2166 , HOH A:2190
BINDING SITE FOR RESIDUE CL A 601
8
AC8
SOFTWARE
ASP A:102 , ASN A:104 , LEU A:139 , GLY A:142 , ASP A:189 , LYS A:190 , HOH A:2258
BINDING SITE FOR RESIDUE GOL A1001
9
AC9
SOFTWARE
GLU A:22 , PRO A:70 , LEU A:71 , ASP A:72 , VAL A:103 , ASP A:105 , NA A:501 , HOH A:2259 , HOH A:2260 , HOH A:2261 , HOH A:2262
BINDING SITE FOR RESIDUE GOL A1002
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CAD23_MOUSE_002 (L207V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CAD23_MOUSE_002
*
M
229
V
CAD23_MOUSE
---
---
A
L
207
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: CADHERIN_2 (A:20-110|A:111-206|-|-|-|-|-|-|-|-...)
2: CADHERIN_1 (A:98-108|-|-|-|-|-|-|-|-|-|-|-|-|-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CADHERIN_2
PS50268
Cadherins domain profile.
CAD23_MOUSE
42-132
133-236
237-348
349-460
461-561
562-671
672-784
779-890
891-995
996-1102
1103-1208
1210-1313
1314-1418
1420-1527
1529-1634
1635-1744
1759-1851
1852-1959
1960-2069
2070-2174
2175-2293
2297-2402
2403-2509
2510-2611
2614-2722
2729-2846
2847-2975
2
A:20-110
A:111-206
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
CADHERIN_1
PS00232
Cadherin domain signature.
CAD23_MOUSE
120-130
336-346
549-559
659-669
766-776
878-888
1090-1100
1406-1416
1515-1525
1622-1632
1732-1742
1839-1849
1947-1957
2057-2067
2281-2291
2390-2400
2599-2609
1
A:98-108
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cadherin_2wcpA01 (A:115-205)
1b: PFAM_Cadherin_2wcpA02 (A:115-205)
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Clans
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Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Mus musculus (Mouse)
(26)
1a
Cadherin-2wcpA01
A:115-205
1b
Cadherin-2wcpA02
A:115-205
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Chain A
Asymmetric Unit 1
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