PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2WBI
Asym. Unit
Info
Asym.Unit (131 KB)
Biol.Unit 1 (243 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ACYL-COA DEHYDROGENASE 11
Authors
:
J. R. C. Muniz, K. Guo, P. Savitsky, A. Roos, W. Yue, E. Pilka, F. Von Delf A. M. Edwards, C. Bountra, C. H. Arrowsmith, J. Weigelt, U. Oppermann
Date
:
28 Feb 09 (Deposition) - 12 May 09 (Release) - 05 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Human, Acyl-Coa, Dehydrogenase, Phosphoprotein, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. C. Muniz, K. Guo, P. Savitsky, A. Roos, W. Yue, E. Pilka, F. Von Delft, A. M. Edwards, C. Bountra, C. H. Arrowsmith, J. Weigelt, U. Oppermann
Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
To Be Published
[
close entry info
]
Hetero Components
(3, 18)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
3a: UNKNOWN ATOM (UNXa)
3b: UNKNOWN ATOM (UNXb)
3c: UNKNOWN ATOM (UNXc)
3d: UNKNOWN ATOM (UNXd)
3e: UNKNOWN ATOM (UNXe)
3f: UNKNOWN ATOM (UNXf)
3g: UNKNOWN ATOM (UNXg)
3h: UNKNOWN ATOM (UNXh)
3i: UNKNOWN ATOM (UNXi)
3j: UNKNOWN ATOM (UNXj)
3k: UNKNOWN ATOM (UNXk)
3l: UNKNOWN ATOM (UNXl)
3m: UNKNOWN ATOM (UNXm)
3n: UNKNOWN ATOM (UNXn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
3
UNX
14
Ligand/Ion
UNKNOWN ATOM
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:152 , MET A:154 , THR A:155 , ALA A:160 , SER A:161 , SER A:162 , TRP A:186 , SER A:188 , HIS A:246 , VAL A:397 , LEU A:400 , PRO A:404 , GLU A:406 , VAL A:407 , ARG B:305 , PHE B:308 , LEU B:312 , HIS B:315 , GLU B:316 , GLN B:375 , VAL B:376 , GLY B:378 , GLY B:379
BINDING SITE FOR RESIDUE FAD A 600
02
AC2
SOFTWARE
ARG A:305 , PHE A:308 , LEU A:312 , HIS A:315 , GLU A:316 , GLN A:375 , VAL A:376 , GLY A:378 , GLY A:379 , PHE B:152 , MET B:154 , THR B:155 , ALA B:160 , SER B:161 , SER B:162 , TRP B:186 , SER B:188 , HIS B:246 , VAL B:397 , LEU B:400 , PRO B:404 , GLU B:406 , VAL B:407
BINDING SITE FOR RESIDUE FAD B 600
03
AC3
SOFTWARE
LYS A:310 , HIS A:315 , GLU A:316
BINDING SITE FOR RESIDUE PO4 A1427
04
AC4
SOFTWARE
LYS B:310 , ALA B:314 , HIS B:315 , GLU B:316
BINDING SITE FOR RESIDUE PO4 B1426
05
AC5
SOFTWARE
ARG A:275 , HIS A:283 , ASP A:402
BINDING SITE FOR RESIDUE UNX A1428
06
AC6
SOFTWARE
SER A:188
BINDING SITE FOR RESIDUE UNX A1429
07
AC7
SOFTWARE
UNX A:1431
BINDING SITE FOR RESIDUE UNX A1430
08
AC8
SOFTWARE
UNX A:1430 , UNX A:1432
BINDING SITE FOR RESIDUE UNX A1431
09
AC9
SOFTWARE
ASN A:390 , UNX A:1431
BINDING SITE FOR RESIDUE UNX A1432
10
BC1
SOFTWARE
ARG B:275 , ASP B:402 , UNX B:1428
BINDING SITE FOR RESIDUE UNX B1427
11
BC2
SOFTWARE
UNX B:1427
BINDING SITE FOR RESIDUE UNX B1428
12
BC3
SOFTWARE
ASP B:240 , UNX B:1430
BINDING SITE FOR RESIDUE UNX B1429
13
BC4
SOFTWARE
ASN B:390 , UNX B:1429 , UNX B:1431
BINDING SITE FOR RESIDUE UNX B1430
14
BC5
SOFTWARE
ASN B:390 , UNX B:1430 , UNX B:1432
BINDING SITE FOR RESIDUE UNX B1431
15
BC6
SOFTWARE
UNX B:1431
BINDING SITE FOR RESIDUE UNX B1432
16
BC7
SOFTWARE
UNX B:1435
BINDING SITE FOR RESIDUE UNX B1434
17
BC8
SOFTWARE
UNX B:1434
BINDING SITE FOR RESIDUE UNX B1435
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2wbia2 (A:266-425)
1b: SCOP_d2wbib2 (B:266-424)
2a: SCOP_d2wbia1 (A:22-265)
2b: SCOP_d2wbib1 (B:22-265)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Acyl-CoA dehydrogenase C-terminal domain-like
(61)
Family
:
automated matches
(29)
Protein domain
:
automated matches
(29)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d2wbia2
A:266-425
1b
d2wbib2
B:266-424
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Superfamily
:
Acyl-CoA dehydrogenase NM domain-like
(61)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2wbia1
A:22-265
2b
d2wbib1
B:22-265
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2wbiA02 (A:150-266)
1b: CATH_2wbiB02 (B:150-266)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 2
(35)
Homologous Superfamily
:
Butyryl-CoA Dehydrogenase, subunit A, domain 2
(35)
Human (Homo sapiens)
(14)
1a
2wbiA02
A:150-266
1b
2wbiB02
B:150-266
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Acyl_CoA_dh_1_2wbiB01 (B:266-417)
1b: PFAM_Acyl_CoA_dh_1_2wbiB02 (B:266-417)
2a: PFAM_Acyl_CoA_dh_M_2wbiB03 (B:151-206)
2b: PFAM_Acyl_CoA_dh_M_2wbiB04 (B:151-206)
3a: PFAM_Acyl_CoA_dh_N_2wbiB05 (B:24-147)
3b: PFAM_Acyl_CoA_dh_N_2wbiB06 (B:24-147)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Acyl-CoA_dh
(32)
Family
:
Acyl-CoA_dh_1
(24)
Homo sapiens (Human)
(10)
1a
Acyl-CoA_dh_1-2wbiB01
B:266-417
1b
Acyl-CoA_dh_1-2wbiB02
B:266-417
Clan
:
no clan defined [family: Acyl-CoA_dh_M]
(24)
Family
:
Acyl-CoA_dh_M
(24)
Homo sapiens (Human)
(10)
2a
Acyl-CoA_dh_M-2wbiB03
B:151-206
2b
Acyl-CoA_dh_M-2wbiB04
B:151-206
Clan
:
no clan defined [family: Acyl-CoA_dh_N]
(23)
Family
:
Acyl-CoA_dh_N
(23)
Homo sapiens (Human)
(10)
3a
Acyl-CoA_dh_N-2wbiB05
B:24-147
3b
Acyl-CoA_dh_N-2wbiB06
B:24-147
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (131 KB)
Header - Asym.Unit
Biol.Unit 1 (243 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2WBI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help