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2WBF
Asym. Unit
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Asym.Unit (139 KB)
Biol.Unit 1 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF SERA5E FROM PLASMODIUM FALCIPARUM WITH LOOP 690-700 ORDERED
Authors
:
B. J. Smith, R. L. Malby, P. M. Colman, O. B. Clarke
Date
:
27 Feb 09 (Deposition) - 31 Mar 09 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Serine Repeat Antigen, Sera, Malaria, Vacuole, Protease, Cathepsin, Hydrolase, Plasmodium, Glycoprotein, Thiol Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. N. Hodder, J. E. Mccoubrie, R. L. Malby, P. R. Gilson, O. B. Clarke, W. D Fairlie, P. M. Colman, B. J. Smith, B. S Crabb
Structural And Functional Insights Into The Protease-Like Antigen Plasmodium Falciparum Sera5 And Its Non-Canonical Active-Site Serine
To Be Published
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
3f: DIMETHYL SULFOXIDE (DMSf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
DMS
6
Ligand/Ion
DIMETHYL SULFOXIDE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP X:589 , SER X:641 , TYR X:663 , ASN X:664 , TYR X:665 , TYR X:703 , HOH X:2245
BINDING SITE FOR RESIDUE DMS X1828
02
AC2
SOFTWARE
GLU X:739 , ASN X:740 , ASP X:757 , GLY X:777 , HOH X:2165 , HOH X:2167
BINDING SITE FOR RESIDUE CA X1829
03
AC3
SOFTWARE
SER X:640 , LYS X:667 , TYR X:735 , HOH X:2037
BINDING SITE FOR RESIDUE CL X1830
04
AC4
SOFTWARE
ASP X:634 , ARG X:635 , CYS X:636 , ASP X:637
BINDING SITE FOR RESIDUE CL X1831
05
AC5
SOFTWARE
GLU X:588 , ASP X:589 , TYR X:663 , HOH X:2246
BINDING SITE FOR RESIDUE DMS X1832
06
AC6
SOFTWARE
LYS X:701 , TRP X:789 , GLY X:790 , PRO X:791 , TYR X:792 , TRP X:793 , HOH X:2028
BINDING SITE FOR RESIDUE CL X1833
07
AC7
SOFTWARE
CYS X:809 , HIS X:810 , ASN X:812 , HOH X:2247 , HOH X:2248
BINDING SITE FOR RESIDUE DMS X1834
08
AC8
SOFTWARE
ASN X:580
BINDING SITE FOR RESIDUE CL X1835
09
AC9
SOFTWARE
GLU X:709 , ASP X:758 , HOH X:2087 , HOH X:2129 , HOH X:2234
BINDING SITE FOR RESIDUE CA X1836
10
BC1
SOFTWARE
ASN X:626 , TYR X:628 , TYR X:652 , CYS X:672 , HOH X:2076
BINDING SITE FOR RESIDUE DMS X1837
11
BC2
SOFTWARE
ARG X:710 , ASN X:714 , HOH X:2133
BINDING SITE FOR RESIDUE DMS X1838
12
BC3
SOFTWARE
SER X:747 , GLY X:748 , LYS X:749 , GLY X:794 , ASP X:795 , HOH X:2207
BINDING SITE FOR RESIDUE DMS X1839
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_HIS (X:760-770)
2: THIOL_PROTEASE_ASN (X:782-801)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
SERA_PLAFD
752-762
1
X:760-770
2
THIOL_PROTEASE_ASN
PS00640
Eukaryotic thiol (cysteine) proteases asparagine active site.
SERA_PLAFD
774-793
1
X:782-801
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2wbfX00 (X:563-827)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Malaria parasite (Plasmodium falciparum)
(1)
1a
2wbfX00
X:563-827
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_C1_2wbfX01 (X:573-819)
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Clans
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Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Plasmodium falciparum (isolate CDC / Honduras)
(1)
1a
Peptidase_C1-2wbfX01
X:573-819
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