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Getting 'Exon' information from database.
2WBD
Asym. Unit
Info
Asym.Unit (410 KB)
Biol.Unit 1 (205 KB)
Biol.Unit 2 (204 KB)
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(1)
Title
:
FRUCTOSE-1,6-BISPHOSPHATASE(D-FRUCTOSE-1,6-BISPHOSPHATE-1-PHOSPHOHYDROLASE) (E.C.3.1.3.11) COMPLEXED WITH AN AMP SITE INHIBITOR
Authors
:
A. Ruf, C. Joseph, J. Benz, B. Fol, T. Tetaz, E. Kitas, P. Mohr, B. Kuhn, H. P. Wessel, P. Hebeisen, W. Haap, W. Huber, R. Alvarez Sanchez, A. Paehler, A. Bernadeau, M. Gubler, B. Schott, E. Tozzo
Date
:
26 Feb 09 (Deposition) - 22 Dec 09 (Release) - 16 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Phosphoric Monoester, Allosteric Enzyme, Carbohydrate Metabolism, Gluconeogenesis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Kitas, P. Mohr, B. Kuhn, H. P. Wessel, P. Hebeisen, W. Haap, A. Ruf, J. Benz, C. Joseph, W. Huber, R. Alvarez Sanchez, A. Paehler, A. Bernadeau, M. Gubler, B. Schott, E. Tozzo
Sulfonylureido Thiazoles As Fructose-1, 6- Bisphosphatase Inhibitors For The Treatment Of Type-2 Diabetes.
Bioorg. Med. Chem. Lett. V. 20 594 2010
[
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5a)
1b: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5b)
1c: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5c)
1d: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5d)
1e: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5e)
1f: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5f)
1g: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5g)
1h: N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBA... (RO5h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
RO5
8
Ligand/Ion
N-[(5-BROMO-1,3-THIAZOL-2-YL)CARBAMOYL]-3-ETHYLBENZENESULFONAMIDE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:17 , MET A:18 , GLU A:20 , GLY A:21 , ARG A:22 , GLY A:26 , THR A:27 , GLY A:28 , GLU A:29 , LEU A:30 , THR A:31 , HOH A:2057 , THR C:27 , RO5 C:1337
BINDING SITE FOR RESIDUE RO5 A1337
2
AC2
SOFTWARE
VAL B:17 , MET B:18 , GLU B:20 , GLY B:21 , ARG B:22 , ALA B:24 , GLY B:26 , THR B:27 , GLY B:28 , GLU B:29 , LEU B:30 , THR B:31 , RO5 D:1337
BINDING SITE FOR RESIDUE RO5 B1337
3
AC3
SOFTWARE
THR A:27 , RO5 A:1337 , VAL C:17 , MET C:18 , GLU C:20 , GLY C:21 , ARG C:22 , GLY C:26 , THR C:27 , GLY C:28 , GLU C:29 , LEU C:30 , THR C:31 , HOH C:2084
BINDING SITE FOR RESIDUE RO5 C1337
4
AC4
SOFTWARE
GLY B:28 , RO5 B:1337 , VAL D:17 , MET D:18 , GLU D:20 , GLY D:21 , ARG D:22 , GLY D:26 , THR D:27 , GLY D:28 , GLU D:29 , LEU D:30 , THR D:31 , MET D:177 , HOH D:2095
BINDING SITE FOR RESIDUE RO5 D1337
5
AC5
SOFTWARE
VAL E:17 , MET E:18 , GLU E:20 , GLY E:21 , ARG E:22 , GLY E:26 , THR E:27 , GLY E:28 , GLU E:29 , LEU E:30 , THR E:31 , MET E:177 , HOH E:2046 , THR G:27 , RO5 G:1337
BINDING SITE FOR RESIDUE RO5 E1337
6
AC6
SOFTWARE
VAL F:17 , MET F:18 , GLY F:21 , ARG F:22 , ALA F:24 , GLY F:26 , GLY F:28 , GLU F:29 , LEU F:30 , THR F:31 , HOH F:2015 , THR H:27 , GLY H:28
BINDING SITE FOR RESIDUE RO5 F1337
7
AC7
SOFTWARE
RO5 E:1337 , VAL G:17 , MET G:18 , GLU G:20 , GLY G:21 , ARG G:22 , ALA G:24 , GLY G:26 , THR G:27 , GLY G:28 , GLU G:29 , LEU G:30 , THR G:31 , HOH G:2014
BINDING SITE FOR RESIDUE RO5 G1337
8
AC8
SOFTWARE
THR F:27 , GLY F:28 , VAL H:17 , GLU H:20 , GLY H:21 , ARG H:22 , GLY H:26 , THR H:27 , GLY H:28 , GLU H:29 , LEU H:30 , THR H:31 , HOH H:2018
BINDING SITE FOR RESIDUE RO5 H1337
[
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SAPs(SNPs)/Variants
(8, 64)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_002380 (G163S, chain A/B/C/D/E/F/G/H, )
2: VAR_002381 (A176D, chain A/B/C/D/E/F/G/H, )
3: VAR_038812 (F193S, chain A/B/C/D/E/F/G/H, )
4: VAR_022212 (K217K, chain A/B/C/D/E/F/G/H, )
5: VAR_022213 (F232I, chain A/B/C/D/E/F/G/H, )
6: VAR_022214 (R254L, chain A/B/C/D/E/F/G/H, )
7: VAR_038813 (P283R, chain A/B/C/D/E/F/G/H, )
8: VAR_002382 (V324A, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002380
G
164
S
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D/E/F/G/H
G
163
S
2
UniProt
VAR_002381
A
177
D
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D/E/F/G/H
A
176
D
3
UniProt
VAR_038812
F
194
S
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D/E/F/G/H
F
193
S
4
UniProt
VAR_022212
R
218
K
F16P1_HUMAN
Polymorphism
1769259
A/B/C/D/E/F/G/H
K
217
K
5
UniProt
VAR_022213
F
233
I
F16P1_HUMAN
Polymorphism
2297085
A/B/C/D/E/F/G/H
F
232
I
6
UniProt
VAR_022214
R
255
L
F16P1_HUMAN
Polymorphism
28369761
A/B/C/D/E/F/G/H
R
254
L
7
UniProt
VAR_038813
P
284
R
F16P1_HUMAN
Disease (FBPD)
---
A/B/C/D/E/F/G/H
P
283
R
8
UniProt
VAR_002382
V
325
A
F16P1_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
V
324
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: FBPASE (A:273-285,B:273-285,C:273-285,D:27...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FBPASE
PS00124
Fructose-1-6-bisphosphatase active site.
F16P1_HUMAN
274-286
8
A:273-285
B:273-285
C:273-285
D:273-285
E:273-285
F:273-285
G:273-285
H:273-285
[
close PROSITE info
]
Exons
(7, 56)
Info
All Exons
Exon 1.2a (A:9-56 | B:9-56 | C:9-56 | D:9-56 ...)
Exon 1.3 (A:56-110 (gaps) | B:56-110 (gaps) ...)
Exon 1.4 (A:111-141 | B:111-141 | C:111-141 ...)
Exon 1.5 (A:142-188 | B:142-188 | C:142-188 ...)
Exon 1.6 (A:189-234 | B:189-234 | C:189-234 ...)
Exon 1.7 (A:235-274 | B:235-274 | C:235-274 ...)
Exon 1.8b (A:275-336 | B:275-336 | C:275-336 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000375326
2a
ENSE00001466714
chr9:
97401789-97401423
367
F16P1_HUMAN
1-57
57
8
A:9-56
B:9-56
C:9-56
D:9-56
E:9-56
F:9-56
G:9-56
H:9-56
48
48
48
48
48
48
48
48
1.3
ENST00000375326
3
ENSE00001667291
chr9:
97382773-97382611
163
F16P1_HUMAN
57-111
55
8
A:56-110 (gaps)
B:56-110 (gaps)
C:56-110 (gaps)
D:56-110 (gaps)
E:56-110 (gaps)
F:56-110 (gaps)
G:56-110 (gaps)
H:56-110 (gaps)
55
55
55
55
55
55
55
55
1.4
ENST00000375326
4
ENSE00001759285
chr9:
97380142-97380050
93
F16P1_HUMAN
112-142
31
8
A:111-141
B:111-141
C:111-141
D:111-141
E:111-141
F:111-141
G:111-141
H:111-141
31
31
31
31
31
31
31
31
1.5
ENST00000375326
5
ENSE00000895738
chr9:
97372343-97372203
141
F16P1_HUMAN
143-189
47
8
A:142-188
B:142-188
C:142-188
D:142-188
E:142-188
F:142-188
G:142-188
H:142-188
47
47
47
47
47
47
47
47
1.6
ENST00000375326
6
ENSE00002196628
chr9:
97369234-97369097
138
F16P1_HUMAN
190-235
46
8
A:189-234
B:189-234
C:189-234
D:189-234
E:189-234
F:189-234
G:189-234
H:189-234
46
46
46
46
46
46
46
46
1.7
ENST00000375326
7
ENSE00000895736
chr9:
97367858-97367739
120
F16P1_HUMAN
236-275
40
8
A:235-274
B:235-274
C:235-274
D:235-274
E:235-274
F:235-274
G:235-274
H:235-274
40
40
40
40
40
40
40
40
1.8b
ENST00000375326
8b
ENSE00001889161
chr9:
97365854-97365415
440
F16P1_HUMAN
276-338
63
8
A:275-336
B:275-336
C:275-336
D:275-336
E:275-336
F:275-336
G:275-336
H:275-336
62
62
62
62
62
62
62
62
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2wbda_ (A:)
1b: SCOP_d2wbdb_ (B:)
1c: SCOP_d2wbdc_ (C:)
1d: SCOP_d2wbdd_ (D:)
1e: SCOP_d2wbde_ (E:)
1f: SCOP_d2wbdf_ (F:)
1g: SCOP_d2wbdg_ (G:)
1h: SCOP_d2wbdh_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Carbohydrate phosphatase
(140)
Superfamily
:
Carbohydrate phosphatase
(140)
Family
:
Inositol monophosphatase/fructose-1,6-bisphosphatase-like
(121)
Protein domain
:
automated matches
(20)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d2wbda_
A:
1b
d2wbdb_
B:
1c
d2wbdc_
C:
1d
d2wbdd_
D:
1e
d2wbde_
E:
1f
d2wbdf_
F:
1g
d2wbdg_
G:
1h
d2wbdh_
H:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2wbdB01 (B:9-199)
1b: CATH_2wbdC01 (C:9-199)
1c: CATH_2wbdD01 (D:9-199)
1d: CATH_2wbdF01 (F:9-199)
1e: CATH_2wbdG01 (G:9-199)
1f: CATH_2wbdH01 (H:9-199)
1g: CATH_2wbdA01 (A:9-199)
1h: CATH_2wbdE01 (E:9-199)
2a: CATH_2wbdA02 (A:200-334)
2b: CATH_2wbdB02 (B:200-334)
2c: CATH_2wbdC02 (C:200-334)
2d: CATH_2wbdD02 (D:200-334)
2e: CATH_2wbdE02 (E:200-334)
2f: CATH_2wbdF02 (F:200-334)
2g: CATH_2wbdG02 (G:200-334)
2h: CATH_2wbdH02 (H:200-334)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Fructose-1,6-Bisphosphatase; Chain A, domain 1
(114)
Homologous Superfamily
:
Fructose-1,6-Bisphosphatase, subunit A, domain 1
(114)
Human (Homo sapiens)
(25)
1a
2wbdB01
B:9-199
1b
2wbdC01
C:9-199
1c
2wbdD01
D:9-199
1d
2wbdF01
F:9-199
1e
2wbdG01
G:9-199
1f
2wbdH01
H:9-199
1g
2wbdA01
A:9-199
1h
2wbdE01
E:9-199
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
[code=3.40.190.80, no name defined]
(109)
Human (Homo sapiens)
(25)
2a
2wbdA02
A:200-334
2b
2wbdB02
B:200-334
2c
2wbdC02
C:200-334
2d
2wbdD02
D:200-334
2e
2wbdE02
E:200-334
2f
2wbdF02
F:200-334
2g
2wbdG02
G:200-334
2h
2wbdH02
H:200-334
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_FBPase_2wbdH01 (H:11-334)
1b: PFAM_FBPase_2wbdH02 (H:11-334)
1c: PFAM_FBPase_2wbdH03 (H:11-334)
1d: PFAM_FBPase_2wbdH04 (H:11-334)
1e: PFAM_FBPase_2wbdH05 (H:11-334)
1f: PFAM_FBPase_2wbdH06 (H:11-334)
1g: PFAM_FBPase_2wbdH07 (H:11-334)
1h: PFAM_FBPase_2wbdH08 (H:11-334)
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Clan
:
Phospoesterase
(42)
Family
:
FBPase
(32)
Homo sapiens (Human)
(9)
1a
FBPase-2wbdH01
H:11-334
1b
FBPase-2wbdH02
H:11-334
1c
FBPase-2wbdH03
H:11-334
1d
FBPase-2wbdH04
H:11-334
1e
FBPase-2wbdH05
H:11-334
1f
FBPase-2wbdH06
H:11-334
1g
FBPase-2wbdH07
H:11-334
1h
FBPase-2wbdH08
H:11-334
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