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2WB9
Asym. Unit
Info
Asym.Unit (92 KB)
Biol.Unit 1 (44 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
FASCIOLA HEPATICA SIGMA CLASS GST
Authors
:
K. Line, M. N. Isupov, J. Lacourse, P. M. Brophy, J. A. Littlechild
Date
:
23 Feb 09 (Deposition) - 31 Mar 10 (Release) - 01 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.59
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Thioredoxin Fold, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Line, M. N. Isupov, J. Lacourse, P. M. Brophy, J. A. Littlechild
The 1. 6 Angstrom Crystal Structure Of The Fasciola Hepatica Sigma Class Gst
To Be Published
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: BROMIDE ION (BRa)
1b: BROMIDE ION (BRb)
1c: BROMIDE ION (BRc)
1d: BROMIDE ION (BRd)
1e: BROMIDE ION (BRe)
2a: CYSTEINE (CYSa)
3a: GLUTATHIONE (GSHa)
3b: GLUTATHIONE (GSHb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BR
5
Ligand/Ion
BROMIDE ION
2
CYS
1
Mod. Amino Acid
CYSTEINE
3
GSH
2
Ligand/Ion
GLUTATHIONE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:10 , PHE A:11 , ARG A:16 , TRP A:41 , LYS A:45 , ARG A:52 , VAL A:53 , PRO A:54 , GLU A:70 , SER A:71 , CYS A:301 , HOH A:2076 , ASP B:104 , HOH B:2146
BINDING SITE FOR RESIDUE GSH A 300
2
AC2
SOFTWARE
TYR A:10 , PHE A:13 , GLY A:15 , ARG A:16 , TYR A:106 , TYR A:110 , GSH A:300 , HOH A:2233 , HOH A:2234
BINDING SITE FOR RESIDUE CYS A 301
3
AC3
SOFTWARE
ASP A:104 , HOH A:2133 , TYR B:10 , PHE B:11 , ARG B:16 , TRP B:41 , LYS B:45 , ARG B:52 , VAL B:53 , PRO B:54 , GLU B:70 , SER B:71 , HOH B:2088 , HOH B:2092 , HOH B:2155 , HOH B:2262
BINDING SITE FOR RESIDUE GSH B 300
4
AC4
SOFTWARE
GLU B:18 , ARG B:21 , TYR B:202 , ARG B:206 , HOH B:2250
BINDING SITE FOR RESIDUE BR B1213
5
AC5
SOFTWARE
PHE A:164 , THR A:168 , ARG A:206 , BR A:1215
BINDING SITE FOR RESIDUE BR A1213
6
AC6
SOFTWARE
LYS A:64 , MET B:38 , HOH B:2025 , HOH B:2061
BINDING SITE FOR RESIDUE BR B1214
7
AC7
SOFTWARE
GLN A:180 , LYS A:181 , HOH A:2194 , HOH A:2202
BINDING SITE FOR RESIDUE BR A1214
8
AC8
SOFTWARE
ARG A:14 , HIS A:169 , BR A:1213
BINDING SITE FOR RESIDUE BR A1215
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2wb9a2 (A:85-211)
1b: SCOP_d2wb9b2 (B:85-211)
2a: SCOP_d2wb9a1 (A:2-84)
2b: SCOP_d2wb9b1 (B:2-84)
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Folds
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Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Fasciola hepatica [TaxId: 6192]
(3)
1a
d2wb9a2
A:85-211
1b
d2wb9b2
B:85-211
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Fasciola hepatica [TaxId: 6192]
(4)
2a
d2wb9a1
A:2-84
2b
d2wb9b1
B:2-84
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2wb9A01 (A:2-83)
1b: CATH_2wb9B01 (B:2-83)
2a: CATH_2wb9A02 (A:84-211)
2b: CATH_2wb9B02 (B:84-211)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Liver fluke (Fasciola hepatica)
(5)
1a
2wb9A01
A:2-83
1b
2wb9B01
B:2-83
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Liver fluke (Fasciola hepatica)
(4)
2a
2wb9A02
A:84-211
2b
2wb9B02
B:84-211
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_2wb9B01 (B:86-193)
1b: PFAM_GST_C_2wb9B02 (B:86-193)
2a: PFAM_GST_N_2wb9B03 (B:7-80)
2b: PFAM_GST_N_2wb9B04 (B:7-80)
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Clans
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(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Fasciola hepatica (Liver fluke)
(3)
1a
GST_C-2wb9B01
B:86-193
1b
GST_C-2wb9B02
B:86-193
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Fasciola hepatica (Liver fluke)
(3)
2a
GST_N-2wb9B03
B:7-80
2b
GST_N-2wb9B04
B:7-80
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (92 KB)
Header - Asym.Unit
Biol.Unit 1 (44 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
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